Showing 1359 open source projects for "sql command line"

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  • 1
    dna-barcode

    dna-barcode

    Find and analyze barcodes in DNA sequence files

    Find and analyze barcodes in DNA sequence files
    Downloads: 0 This Week
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  • 2
    Discrete Dipole Aproximation Project

    Discrete Dipole Aproximation Project

    Plugin orientated Discrete Dipole Approximation (DDA) Solver

    Discrete Dipole Approximation Project, is a software package designed to solve the Discrete Dipole Problem by the Discrete Dipole Approximation (DDA) method. This software is desgined to be plugin operated allowing for easy implimincation of new solver methods to improve the efficienty of the code. The plugin support also allow the program to write its output in multiple formats and structures defined by plugins.
    Downloads: 0 This Week
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  • 3

    Fekke's BMI calculator

    C# BMI Calculator with wizzard.

    An application written in C#, which will assist you in calculating your Body Mass Index.
    Downloads: 0 This Week
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  • 4
    BODE: Bioinformatics ODds and Ends
    A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others).
    Downloads: 0 This Week
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  • 5

    ADM to GPX

    Convert a Garmin ADM database file to a GPX file

    User data exported from later model Garmin GPSmap marine GPS sets consists of ADM files written to a VFAT-formatted SD card. This data includes user-generated waypoints and routes, and recorded GPS tracks. adm2gpx converts this data to industry-standard GPX records that may be imported into third-party mapping and GPS software.
    Downloads: 0 This Week
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  • 6
    Framework for individual and population genome assembly and discovery of genetic variants from sequence reads.
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    Downloads: 28 This Week
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  • 7

    Genetic data converter

    Convert genetic data for hapmixmap software

    Genetic data converter, for hapmap.org and hapmixmap data formats. Reads data in tabular format and writes in hapmixmap format. It's possible to add extensions to output different data formats.
    Downloads: 0 This Week
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  • 8

    AutoMap

    AutoMap is a tool for structural biology and drug design.

    AutoMap takes a series of poses obtained from molecular docking and applies the site, epitope and conformational mapping techniques to the poses to select likely ligand binding modes.
    Downloads: 0 This Week
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  • 9
    PRINSEQ
    A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.
    Downloads: 27 This Week
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  • 10
    Gebabbel

    Gebabbel

    A frontend for gpsbabel

    Gebabbel is a GUI for the famous gpsbabel, a command line tool to convert various GPS file formats back and forth. Thanks to gpsbabel, you cannot only convert files but also exchange data with your GPS device (e.g. Garmin and Magellan) directly.
    Downloads: 0 This Week
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  • 11
    iTree: scalable multithreaded phylogenomic pipeline
    Downloads: 0 This Week
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  • 12

    tagfs

    Tag based file manager CLI

    A Tag based file management system. Command line interface. User can add tags for files (individually or for the folder). Allows search by tags.
    Downloads: 0 This Week
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  • 13
    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
    Downloads: 0 This Week
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  • 14
    guiLiner provides a representation of another program's options and information, enabling one to run a command line program directly from a GUI. In other words, guiLiner creates a GUI for almost any command-line program.
    Downloads: 0 This Week
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  • 15
    DOMjudge programming contest jury system

    DOMjudge programming contest jury system

    DOMjudge is an automated judge system for programming contests.

    NOTE: DOMjudge has moved to www.domjudge.org and Github for all development. DOMjudge is an automated judge system to run programming contests. Both team and jury side interfaces are web based, with a command line submit tool available as well. It is written in PHP, shell-script and C/C++ and needs MySQL and a webserver.
    Downloads: 0 This Week
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  • 16

    MendelScan

    Variant scoring and linkage mapping for family exome sequencing

    MendelScan is a tool for prioritizing candidate variants in family-based studies of inherited disease.
    Downloads: 0 This Week
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  • 17

    SunlightDPD

    Open source codes related to dissipative particle dynamics

    SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method. Currently the file release contains the HNC integral equation code.
    Downloads: 0 This Week
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  • 18
    Statistics modules in Perl Data Language, with a quick-start guide for non-PDL people. They make the PDL shell work like R, but with PDL threading (fast automatic iteration) of procedures including t-test, linear regression, and k-means clustering.
    Downloads: 0 This Week
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  • 19
    Java application for training and deploying text processing applications such as part-of-speech taggers, based on a re-implementation of Brill's algorithm in Java.
    Downloads: 0 This Week
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  • 20
    TagCleaner
    TagCleaner is an application that is able to automatically detect and efficiently remove tag sequences from metagenomic datasets. It is easily configurable and provides a user-friendly interface.
    Downloads: 0 This Week
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  • 21
    TifaMMy isn't the fastest Matrix Multiplication yet! A library for cache oblivious matrix operations using the space filling Peano curve. Aim is for BLAS / LAPACK functionality (but with an intuitive C++ API).
    Downloads: 0 This Week
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  • 22
    Perstem
    Perstem is a Persian (Farsi) stemmer, morphological analyzer, transliterator, and partial part-of-speech tagger. Inflexional morphemes are separated or removed from their stems. Perstem can also tokenize and transliterate between various character set encodings and romanizations.
    Downloads: 0 This Week
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  • 23
    MpcReader retrieves comet and asteroid orbital data in MPC format from the web and store it on your computer in different formats. The data is fetched from the MPC. The main job of MpcReader is to convert plain MPC data to the format needed for KStar
    Downloads: 0 This Week
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  • 24

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    ...The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
    Downloads: 0 This Week
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  • 25
    LExAu: Learning Expectations Autonomously. Library for on-line data driven statistical machine learning.
    Downloads: 0 This Week
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