Showing 8726 open source projects for "java open source"

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  • 1
    Tellurium

    Tellurium

    Model, simulate, and analyze biochemical systems using one tool.

    Tellurium (te.) is a Python environment supporting Spyder2 IDE and Jupyter Notebook aimed for large-scale systems and synthetic biology simulation. It combines a number of existing libraries, including libSBML, libRoadRunner (including libStruct), libAntimony, and is extensible via tePlugins. In addition other tools kits such as matplotlib and NumPy are used to provide additional analysis and plotting support.
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    Downloads: 19 This Week
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  • 2
    Object-oriented crystallographic library and program, for the analysis of Crystal structures from scattering experiments: optimized scattering computation, Graphical interface for structures and data, global optimization algorithms.
    Downloads: 26 This Week
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  • 3

    multinotes

    Text architecture for music theory.

    The text structures of notes and publications in music theory and musical analysis bring challenging requirements: how to include music notation excerpts, graphics, and even combinations thereof, into the typeset flow of paragraphs and into the work-flow, and how to integrate navigable references to these and to single domain entities into running text. Furthermore, dynamic interactive documents can be useful for presenting complicated interdependencies to the reader more clearly, far...
    Downloads: 2 This Week
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  • 4
    GNU Health

    GNU Health

    GNU Health - The Free/Libre Hospital and Health Information System

    GNU Health is the award-winning Hospital and Health Information System (HIS), declared a Digital Public Good and adopted by the United Nations . GNU Health Hospital and Lab information system is used by academic and research institutions around the globe. It is also used in public health system of countries such as Argentina, India, Jamaica, Laos, Cameroon, Suriname. GNU Health is an official GNU project. GNU Health is brought to you by GNU Solidario, an Non-Profit Organization (NGO)...
    Downloads: 29 This Week
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  • 5
    CyberUnits

    CyberUnits

    Class library for computational cybernetics

    CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal.
    Downloads: 26 This Week
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  • 6
    A Matlab toolkit for all aspects of EEG/ERP analysis, especially PCA. If you run into a problem, please send me a note and I'll fix it. The tutorial pdf is in the documentation folder and the tutorial data can be downloaded from a link provided by the pdf. The tutorial file has full install instructions. For all platforms supported by Matlab.
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    Downloads: 16 This Week
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  • 7
    WorldVistA EHR is based on and compatible with the U.S. Department of Veterans Affairs (VA) world renowned EHR, VistA (R). Please refer to the WorldVistA website: http://worldvista.org/Software_Download for download and installation instructions
    Downloads: 15 This Week
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  • 8
    Frevo

    Frevo

    Frevo is probably the simplest tool for evolutionary design

    FREVO is an open-source framework developed in Java to help engineers and scientists in evolutionary design or optimization tasks. The major feature of FREVO is the componentwise decomposition and separation of the key building blocks for each optimization tasks. We identify these as the problem definition, solution representation and the optimization method.
    Downloads: 1 This Week
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  • 9
    GNU SPICE GUI provides a GUI front-end for various freely available electronic circuit simulation engines ie. NG-SPICE and GNU-CAP. It's core function is to generate simulation engine instructions based on user input. However, it also offers extra functionality via applications and utilities developed by others. Electronic Design Automation (EDA) tool suites are used to provide schematic capture and editing, and schematic to netlist conversion. Waveform data viewers are used to display...
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    Downloads: 21 This Week
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  • Desktop and Mobile Device Management Software Icon
    Desktop and Mobile Device Management Software

    It's a modern take on desktop management that can be scaled as per organizational needs.

    Desktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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  • 10
    QSAS
    Analysis and display software targeted at space physics data. Installation instructions are at the bottom of the FILES directory. See documentation at https://qsas.sourceforge.io/QSAShelp/QSAS_help_index.html See also QSAS_Intro_June2018.pptx under FILES Contact: qsassupp@gmail.com E-Mail lists: qsas-users@lists.sourceforge.net qsas-discuss@lists.sourceforge.net
    Downloads: 22 This Week
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  • 11
    QUAST

    QUAST

    Quality Assessment Tool for Genome Assemblies

    QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A...
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    Downloads: 29 This Week
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  • 12
    WxMAP2
    A python-based system to diagnosis and make weather maps (wxmap) of numerical weather prediction models using the Grid Analysis and Display System (GrADS) from opengrads.org
    Downloads: 14 This Week
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  • 13

    Continuation Core and Toolboxes (COCO)

    Toolboxes for parameter continuation and bifurcation analysis.

    Development platform and toolboxes for parameter continuation, e.g., bifurcation analysis of dynamical systems and constrained design optimization. This material is based upon work partially supported by the National Science Foundation under Grant No. 1016467 and the Danish research council (FTP) under the project number 0602-00753B. Any opinions, findings, and conclusions or recommendations expressed on this site are those of the authors and do not necessarily reflect the views of the...
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    Downloads: 28 This Week
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  • 14
    MESMER is designed to analyze and simulate reactions in the gas phase that take place on a potential energy surface that is characterized by having one or more potential wells, and which are typically described by rate coefficients that depend on pressure (or concentration) as well as temperature. MESMER allows you to simulate systems over a wide range of pressures and temperatures, extract rate coefficients, analyze experimental data, fit model parameters and represent rate coefficients in...
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    Downloads: 17 This Week
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  • 15

    NCO netCDF Operators

    Command-line operators for netCDF and HDF files

    The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links.
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    Downloads: 14 This Week
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  • 16
    luscus

    luscus

    molecular editor and viewer

    Luscus is the program for graphical display and editing of molecular systems. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus can also visualize dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to point out a geometrical feature or a physical quantity. The program is developed as a graphical...
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    Downloads: 20 This Week
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  • 17
    ProStack

    ProStack

    ProStack - a platform for image processing and analysis

    ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio
    Downloads: 0 This Week
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  • 18

    42

    Simulation for spacecraft attitude control system analysis and design

    42 is a comprehensive general-purpose simulation of spacecraft attitude and orbit dynamics. Its primary purpose is to support design and validation of attitude control systems, from concept studies through integration and test. 42 accurately models multi-body spacecraft attitude dynamics (with rigid and/or flexible bodies), and both two-body and three-body orbital flight regimes, modelling environments from low Earth orbit to throughout the solar system. 42 simulates multiple spacecraft...
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    Downloads: 14 This Week
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  • 19
    Social Network Visualizer

    Social Network Visualizer

    Social Network Analysis and Visualization software

    Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder)
    Downloads: 22 This Week
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  • 20

    Phobia

    Phobia Motor Controller

    PMC is an open project that aims to build the quality permanent magnet synchronous machine (PMSM) controller for use in a variety of scopes like RC or electric transport.
    Downloads: 13 This Week
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  • 21
    Downloads: 8 This Week
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  • 22
    TRURL

    TRURL

    A suite of RPN calculators and a class library for Object Pascal

    TRURL is a suite of desktop calculators with reverse Polish notation (RPN) written in Object Pascal. Additionally, it comes with a free reusable class library (RPN Engine) as a toolbox for creating your own calculator. TRURL is an acronym for "TRURL is a Reusable Universal RPN Library". Class Libraries: • RPN Engine: Full-featured calculation engine for Pascal-based RPN calculators • Segmitator: Library for virtual seven-segment displays Applications: • TRURL A: Simple demo app...
    Downloads: 19 This Week
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  • 23
    Mathpaqs

    Mathpaqs

    A collection of mathematical packages in pure Ada

    Various mathematical packages including algebra, finite elements, random variables, probability dependency models, unlimited integers. Pure Ada, fully portable. More information on... http://mathpaqs.sf.net Alire crate: https://alire.ada.dev/crates/mathpaqs Mirror: https://github.com/zertovitch/mathpaqs
    Downloads: 8 This Week
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  • 24
    Biosphere3D

    Biosphere3D

    Interactive landscape rendering based on a virtual globe.

    Biosphere3D targets interactive landscape rendering based on a virtual globe. It supports DEM, satellite and aerial images, 3D models (Collada), 3D plant models, and Shapefiles. Biosphere3D was initially developed by the landscape visualization group of the Zuse Institute Berlin by Malte Clasen and is now developed further by Lenné3D GmbH. For more information about the used concepts have a look at the thesis of Malte Clasen: Towards Interactive Landscape Visualization Doctoral...
    Downloads: 17 This Week
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  • 25
    JRC QSAR Model Database

    JRC QSAR Model Database

    (Q)SAR Model Reporting Format Inventory

    In the regulatory assessment of chemicals (e.g. under REACH), Quantitative Structure Activity Models (QSAR) are playing an increasingly important role in predicting properties for hazard and risk assessment. This implies both a need to be able to identify relevant QSARs and to use them to derive estimates and/or have access to their precalculated estimates. To help meet these needs, the JRC QSAR Model Database is established and freely accessible through http://qsardb.jrc.ec.europa.eu/qmrf...
    Downloads: 0 This Week
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