Showing 1359 open source projects for "sql command line"

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  • 1
    Application to estimate haplotypes and other genetics data, based on maximum likehood approach. It can handle present-absent as well as multiallelic loci.
    Downloads: 0 This Week
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  • 2
    CSV Transformer

    CSV Transformer

    transforms xml to csv

    The CSV Transformer is a data processing tool which transforms .xml-Files to comma separated values. The CSV Transformer was created in a load and performance testing project, the use case was to be able to transform 2800 configuration files of a big banking application to a single .csv-File. With this single file it was possible to compare the whole configuration between two releases with the already available tool CSV Comparator. This enabled the team to verify if there were any...
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  • 3
    jAudio
    jAudio is a project implementing a number of common feature extraction algorithms for analyzing audio in java. Output is either in Weka's ARFF format or the ACE format. Can be used either as a GUI application, command-line application, or embedded. The primary repository is on github (dmcennis) which pushes to this projects github repository.
    Downloads: 0 This Week
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  • 4
    mpiP is a lightweight profiling library for MPI applications.
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  • 5
    RTLSDR Scanner

    RTLSDR Scanner

    A cross platform Python frequency scanning GUI for rtl-sdr

    A cross platform Python frequency scanning GUI for USB TV dongles, using the OsmoSDR rtl-sdr library. In other words a cheap, simple Spectrum Analyser. More information can be found at: http://eartoearoak.com/software/rtlsdr-scanner An installer and standalone versions for Windows are located here: https://github.com/EarToEarOak/RTLSDR-Scanner/releases Sources are available on GitHub: https://github.com/EarToEarOak/RTLSDR-Scanner ** The up to date installer is no longer...
    Downloads: 28 This Week
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  • 6
    Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
    Downloads: 0 This Week
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  • 7
    Atlas2
    Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data.
    Downloads: 0 This Week
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  • 8
    olego

    olego

    OLego – short or long RNA-seq read mapping to discover exon junction

    OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast...
    Downloads: 0 This Week
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  • 9

    RandomLib

    Random number library

    RandomLib is a C++ interface to the Mersenne Twister random number generator MT19937 and to the SIMD-oriented Fast Mersenne Twister random number generator, SFMT19937. For documentation, visit http://randomlib.sf.net
    Downloads: 0 This Week
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  • 10

    CRISPR-Offinder

    a CRISPR guide RNA design and off-target searching to

    ...Besides, CRISPR-offinder can find and rank the candidate sgRNAs in genome by off-target sites number, and also can be used to design single or paired-gRNAs. CRISPR-offinder is freely available as a command-line program or accessible via our website. Availability: CRISPR-offinder is freely available at http://crispr-offinder.com/ or http://crispr.igenetech.com/.
    Downloads: 0 This Week
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  • 11
    iMSAT
    iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and money. ...
    Downloads: 0 This Week
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  • 12

    COFILOS

    A Development Framework for Coldfire

    Contains a framework for Coldfire MCUs like 52254. The framework supports a Command Line Interface (CLI) that may work from Serial port, USB or ENET. The framework uses Processor Expert and IDE requirement is MCU Eclipse 10.4 from Freescale. Includes the FunkOS Realtime Operating System by Funkenstein Software Consulting, available at http://funkos.sourceforge.net Mainly it is a support package for the development board Perseus, but I have ported also the RTOS to MCF52233DEMO board. ...
    Downloads: 0 This Week
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  • 13
    FieldTrip

    FieldTrip

    The MATLAB software toolbox for MEG and EEG analysis

    FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis.
    Downloads: 0 This Week
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  • 14

    came

    Identification of chromatin accessibility from NOMe-seq

    Chromatin accessibility plays a key role in epigenetic regulation of gene activation and silencing. Open chromatin regions allow regulatory elements such as transcription factors and polymerases to bind for gene expression while closed chromatin regions prevent the activity of transcriptional machinery. Recently, nucleosome occupancy and methylome sequencing (NOMe-seq) has been developed for simultaneously profiling of chromatin accessibility and DNA methylation on single molecules. However,...
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  • 15
    RoiView
    Explore InSAR data and more
    Downloads: 0 This Week
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  • 16
    PyRadmon Reborn

    PyRadmon Reborn

    PyRadmon, a Python script to use on both Linux and Windows.

    PyRadmon Reborn. This project started after the original programmers quit supporting it. The project now contains support for audio*, has a version that supports two Geiger counters** and a cleaner, more stable code. * = PyAudio is used as library for the audio support. ** = The two counters both run in their own thread. UPDATE-2015-2: * Added timeouts to sockets to prevent crashing of the script. * Updated some comments. UPDATE-2015-1: Since there have been some passed time...
    Downloads: 0 This Week
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  • 17
    This project concerns the development of human language technology resources, based on the approach to share or recycle resources between closely related language. http://gerhard.pro/closely-related-languages/
    Downloads: 0 This Week
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  • 18

    ENLY

    Bioinformatic tool to improve draft genome assemblies by closing gaps

    Downloads: 0 This Week
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  • 19
    Orfeo ToolBox

    Orfeo ToolBox

    OTB is an open-source C++ library for remote sensing images processing

    ...Orfeo ToolBox has three main access depending on the category of user: write processing chains in C++ using existing filters or creating new ones, use the OTB applications, which is a plugin-based framework allowing to extend high-level processing chains from various environment ( command-line, QT, QGis, Python....) or use Monteverdi, a software for everyday life image manipulation and analysis.
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    Downloads: 30 This Week
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  • 20
    Perl OBD-II Logger

    Perl OBD-II Logger

    A Perl program for logging OBD-II PID data

    The goal of the Perl OBD-II Logger project is to create a flexible and efficient application that can capture and log OBD-II Mode 0x01 PID data from an automotive scantool. It is designed with accurate and efficient PID data logging in mind, and provides NO support for reading or resetting diagnostic trouble codes. By default, the output log file contains time-stamped PID values in a simple Comma Separated Values (CSV) format that can be readily imported into popular data analysis or...
    Downloads: 0 This Week
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  • 21
    NGS-TOOLBOX

    NGS-TOOLBOX

    Handy tools to process/analyze next generation sequencing (NGS) data

    ...Each tool is designed to ensure convenient and intuitive usage. Installation and usage does not require any bioinformatics skills. All scripts work out-of-the-box. Advanced users may use the command line based Perl scripts to build automated sequence analyses/processing pipelines. If you use the NGS TOOLBOX you for publication purposes you can cite the following methods paper: Rosenkranz D, Han CT, Roovers EF, Zischler H, Ketting RF. Piwi proteins and piRNAs in mammalian oocytes and early embryos: From sample to sequence. ...
    Downloads: 0 This Week
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  • 22
    FREJ
    FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
    Downloads: 0 This Week
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  • 23

    gladTeX

    GladTeX -- embed LaTeX-quality images in HTML

    GladTeX is a preprocessor that enables the use of LaTeX maths within HTML code. The maths, embedded in <eq>..</eq> tags, as if within $$..$$ in LaTeX, is fed through latex and replaced by images. Additionally, alt-tags are auto-generated which display the LaTeX-equations when the HTML is viewed e.g. with a text mode browser or by someone with vision loss. The project home has moved, please visit https://humenda.github.io/GladTeX
    Downloads: 0 This Week
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  • 24

    Otanes

    Otanes is a live TV simulator for Content-Centric Networking (CCN).

    Otanes is a highly configurable component-based CCN simulator (based on OMNeT++ simulation environment) specifically optimized for live TV research activities. It has armed with EvalVid (a video quality evaluation toolset) to reconstruct the received video and evaluate QoS and QoE metrics. It has.introduced background traffic and traffic engineering capability as well.
    Downloads: 0 This Week
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  • 25
    AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
    Downloads: 0 This Week
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