Showing 1359 open source projects for "sql command line"

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  • 1
    LMAP

    LMAP

    Lightweight Multigene Analyses in PAML

    Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: https://doi.org/10.1186/s12859-016-1204-5
    Downloads: 0 This Week
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  • 2
    Helsinki Finite-State Technology
    The Helsinki Finite-State Transducer toolkit is intended for processing natural language morphologies. The toolkit is demonstrated by wide-coverage implementations of a number of languages of varying morphological complexity.
    Downloads: 2 This Week
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  • 3
    Slim is a data compression system for scientific data sets, a binary and a library with C linkage. Slim works with integer data from one or more channels in a file, which it can compress more effectively and more rapidly than general tools like gzip.
    Downloads: 1 This Week
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  • 4
    datasw

    datasw

    datasw, a tool for rapid processing of HPLC-SAXS data.

    Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS...
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  • 5
    composight
    Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used to...
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  • 6

    OncoIMPACT

    Cancer driver prediction via integrative omics

    OncoIMPACT is a model-driven approach to integrate omics profiles (genomics, transcriptomics etc.) and provides patient-specific cancer driver gene predictions.
    Downloads: 0 This Week
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  • 7
    Scripted Roulette

    Scripted Roulette

    Simulation tool for the casino game Roulette

    Scripted Roulette is an original application which helps you to develop and analyze new betting strategies for the casino game Roulette. Learn and understand more about the chances you really have to win.
    Downloads: 0 This Week
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  • 8
    Elastolix

    Elastolix

    Elastolix converts elastic moduli.

    Elastolix takes any 2 of 6 elastic moduli and calculates the remaining 4. There is a command line tool, named elastolix and a tool with a graphical user interface made with lazarus. Releases for macOS will always be first, others should always follow shortly after.
    Downloads: 0 This Week
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  • 9
    Logic Lab

    Logic Lab

    This is a suite of mathematical software solvers GUI

    This is a suite of mathematical software solvers interface on DLV and other command-line solvers. It helps researchers and students to better comprehend their declarative definitions published on papers. The user can have links to the related papers and to the software of the corresponding definitions.
    Downloads: 1 This Week
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  • 10

    spectralHMM

    A spectral method for inferring selection from time series data

    ***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222
    Downloads: 0 This Week
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  • 11
    MYRA

    MYRA

    A collection of ACO algorithms for the data mining classification task

    MYRA is a collection of Ant Colony Optimization (ACO) algorithms for the data mining classification task. It includes popular rule induction and decision tree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values. This project is now hosted at: https://github.com/febo/myra
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    Downloads: 6 This Week
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  • 12
    CSBB-v2.0

    CSBB-v2.0

    Computational Suite for Bioinformaticians and Biologists

    CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code.
    Downloads: 0 This Week
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  • 13
    CSV Comparator

    CSV Comparator

    CSV Comparator is a tool for comparing files which contain CSV-Data.

    ...It was created for performance engineers to be able to have a easy way to compare data from two testruns and be able to automate the comparing process of various files with scripts. There is a command line tool as well as a user interface. In case you need to compare .xml-Files you can convert them to .csv-Files with my other project CSV Transformer. The advantages by using CSV as input and output are the following: - Many applications allow an export of its data to CSV or Excel(were it could be saved to CSV) - It is possible to pre- and postprocess the data, e.g removing version numbers before comparing - It is easy to create CSV data from logfiles and other resources by using unix tools like sed or awk - CSV can be loaded into other applications, especially Excel, were it can be formatted by macros for analyzing.
    Downloads: 2 This Week
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  • 14
    HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
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  • 15
    RoadRunner represents a state-of-the-art simulation library for SBML models. It is fast, portable and accurate. This projects hosts the library and tools using the library.
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  • 16
    PyCosmic is a tool to detect and clean single images from the disturbing cosmic ray hits. It was designed and tested specifically for CALIFA and other fiber-fed integral-field spectroscopy dataset. It is written in Python and can be executed from the command line. New release is version v0.5. Updated to be compatible with numpy version 1.12. New release is version v0.4. It's now compatible with astropy for fits I/O and computation time is reduced by a factor of 2.
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  • 17
    Lib Hyper Math for GCC (C++)

    Lib Hyper Math for GCC (C++)

    Library Hyper Math for GCC (C++)

    This library has complementary features to the "cmath" library. Here we present functions for trigonometric calculations (cot, sec, csc, acot, asec, acsc) and hyperbolic (coth, sech, csch, acoth, asech, acsch) and exponential (nthrt) calculations and more. The results are presented in radians. For results in degrees multiply 180/M_PI by radians or use function torad. For degrees multiply M_PI/180 or use todeg. For more libraries, go to:...
    Downloads: 0 This Week
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  • 18
    Chapel

    Chapel

    a Productive Parallel Programming Language

    Chapel is an emerging parallel programming language whose design and development are being led by HPE in collaboration with academia, computing labs, and industry. Chapel's goal is to improve the productivity of parallel programmers, from laptops to supercomputers. **Please note that Chapel development has moved to GitHub**
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  • 19
    Lib Finance Math GCC (C++) Lotus 123

    Lib Finance Math GCC (C++) Lotus 123

    Library Finance Math for GCC (C++)

    This library has the implementation of all financial functions in the Lotus 1-2-3 spreadsheet for C++ language, respecting the same nomenclature used (where possible). The financial features of this library are based on the collection of finely-tuned features found in the old Lotus 1-2-3 spreadsheet software. For more libraries, go to: https://sourceforge.net/u/augustomanzano/profile. To see my curriculum vitae go to: http://lattes.cnpq.br/8184615061457853. Augusto...
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  • 20

    MSU's Sparse Fourier Repository

    The Home of DMSFT, AAFFT, GFFT, and MSFFT.

    A collection of sparse Fourier transform codes developed by faculty at MSU. Currently codes for four different prototype sparse FFTs are here: 1.) DMSFT, implemented by Ruochuan Zhang. This is a fast, stable, noise robust, and *fully discrete* improvement on the ideas in GFFT below. It is THE BEST sparse FFT around!!! If you're looking for AAFFT, try this out first. 2.) AAFFT, implemented by Mark Iwen in 2008. This code is easy to use, and documented well, but not implemented...
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  • 21

    BMI Wizard

    BMI Wizard calculates the body mass index (BMI)

    BMI Wizard calculates the body mass index (BMI) from weight and size and vice versa.
    Downloads: 0 This Week
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  • 22

    nccmp

    Compare two NetCDF files in-place.

    We've moved to Gitlab! (gitlab.com/remikz/nccmp) Compares two NetCDF files in-place to find specific variables, dimensions and/or attributes that differ. Highly recommended for any test-driven environment and regression testing large datasets.
    Downloads: 2 This Week
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  • 23
    This software is for processing binary Doppler radar data in, but not limited to, DORADE sweepfile format. The software can modify metadata and moment data using quality control routines and extract moment data as comma-delimited ASCII files.
    Downloads: 0 This Week
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  • 24

    GPU3SNP

    Exhaustive search for third order epistatic interactions using CUDA

    GPU3SNP is a multi-GPU tool that exhaustively analyzes case-control datasets looking for 3-SNP combinations that present epistatic interaction. It provides a list with the combinations that have higher Mutual Information, which is used as measure for interaction. It is parallelized using CUDA and can exploit several GPUs in the same node/system.
    Downloads: 0 This Week
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  • 25

    Gene-Environment iNteraction Simulator 2

    A tool able to simulate gene-environment and gene-gene interactions.

    ...GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface.
    Downloads: 0 This Week
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