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Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data.
Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data.
...Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ).
It’s main features are
1) Label-free, MS1-based quantification
2) Support both LC-MALDI-MS- as well as LC-ESI-MS data
3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data
4) Convenient, graphical user interface
Acknowledgements
The development of MSqBAT is kindly supported by YourKit Java Profiler.
This script and underlying data are in support of the manuscript entitled "Improved reporter ion assignment of raw isobaric stable isotope labeled LC-MALDI-TOF/TOF MS/MS spectral data for quantitative proteomics".
Authors: Thomas Jakoby, Andreas Tholey and Bart H.J. van den Berg*
* = corresponding author bvdberg@live.com
BioSunMS, a flexible software platform for submission, management, retrieval of sample and MS data(MALDI or SELDI), and clinical proteomics-related statistical analysis. BioSunMS integrated all functions into a user-friendly desktop RCP application.
Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.