Search Results for "linux utilities"
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Showing 131 open source projects for "linux utilities"
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Bowtie 2
A fast and sensitive gapped read aligner
Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. Bowtie 2 outputs... -
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1. flattenverilog : Flattens the specified verilog module by removing the hierarchies. It works both for RTL and netlist. 2. preprocessverilog : Verilog Preprocessor to resolve macros like nested `ifdef , `define 3. createhierarchy : Verilog Hierarchy Creation Tool to group a list of instances in RTL or enlist. This creates a new wrapper by encapsulating the instance 4. flatteninstances : Flattens the given list of hierarchical instances- this removes hierarchy by pulling the...
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CFD Utilities
CFD-related Fortran libraries and applications
UPDATE: As of March 2023, the CFDTOOLS project has moved its public repository to NASA's official organization on GitHub: https://www.github.com/nasa/cfdtools While this repository will remain available, it will no longer receive updates or be monitored for issues. Please see the link above for latest releases and issue status. ---- The CFD Utility Software Library (previously known as the Aerodynamics Division Software Library at NASA Ames Research Center) contains nearly 30... -
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Swift Numerics
Advanced mathematical types and functions for Swift
Swift Numerics is a foundational library that extends the Swift standard library with essential numerical protocols, types, and functions needed for scientific and systems programming. It defines generic abstractions over real and complex numbers so algorithms can be written once and work across concrete floating-point types. The package includes RealModule utilities and a full Complex type with the expected arithmetic and transcendental functions, bridging a long-standing gap for numerics... -
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ta4j
A Java library for technical analysis
Ta4j is an open-source Java library for technical analysis. It provides the basic components for the creation, evaluation, and execution of trading strategies. Ta4j is available on Maven Central. You can also download example code from the maven central repository. The wiki is the best place to start learning about ta4j. For more detailed questions, please use the issues tracker. We can calculate indicators over this bar series, in order to forecast the direction of prices through the study... -
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GROMACS
Public/backup repository of the GROMACS molecular simulation toolkit
GROMACS is a molecular simulation toolkit focused on high-performance molecular dynamics. It is widely used for biomolecular systems such as proteins, lipids, nucleic acids, solvents, and ligand interactions. The software is optimized for speed and supports modern CPU and GPU acceleration for large and demanding simulations. It includes tools for system preparation, running simulations, trajectory processing, analysis, and workflow automation. GROMACS is especially strong in computational... -
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go1pylib
go1pylib is a Python library designed to control the Go1 robot
go1pylib is a Python library designed to control the Go1 robot by Unitree Robotics. It provides an easy-to-use interface for robot movement, state management, collision avoidance, battery monitoring, and MQTT communication. Ideal for research and robotics development. -
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alphageometry
AI-driven neuro-symbolic solver for high-school geometry problems
AlphaGeometry, developed by Google DeepMind, is a theorem-proving system that combines symbolic reasoning with deep learning to solve challenging geometry problems, such as those found in mathematical Olympiads. The repository provides the full implementation of DDAR (Deductive Difference and Abductive Reasoning) and AlphaGeometry, two automated geometry solvers described in the 2024 Nature paper “Solving Olympiad Geometry without Human Demonstrations.” AlphaGeometry integrates a symbolic... -
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Intrinsic Core
Local runtime, SDK, and hardware agnostic, real-time control framework
Intrinsic Core is an open, local robotics runtime and SDK for building industrial automation and AI-enabled robotic applications. It provides a preconfigured environment where core robotics services and capabilities are designed to operate together. Built-in functionality includes grasp planning, AI perception, digital twins, simulation, and hardware execution. A hardware-agnostic real-time control framework lets applications switch robot arms and grippers through a unified abstraction... -
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CBIG
Computational Brain Imaging Group tools
CBIG is a comprehensive toolkit maintained by Thomas Yeo’s Computational Brain Imaging Group containing tools for processing and analyzing neuroimaging data—including fMRI preprocessing pipelines, brain parcellation algorithms, mental disorder subtyping models, fMRI dynamic models, registrations between brain spaces, and phenotypic prediction algorithms. After cloning/downloading this repository, please see README inside setup directory to see instructions on how to set up your local... -
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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bta_utils
A set of small utils for BTA
A set of small utilities to operate with BTA telescope -
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GNU SPICE GUI provides a GUI front-end for various freely available electronic circuit simulation engines ie. NG-SPICE and GNU-CAP. It's core function is to generate simulation engine instructions based on user input. However, it also offers extra functionality via applications and utilities developed by others. Electronic Design Automation (EDA) tool suites are used to provide schematic capture and editing, and schematic to netlist conversion. Waveform data viewers are used to display...
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COBOL copybook to XML converter
Converts cobol copybooks to Xml/Java objects
CB2XML (CopyBook to XML) is a COBOL CopyBook to XML converter written in Java and based on the SableCC parser generator. This project includes utilities to convert an XML instance file into its COBOL copybook equivalent string buffer and vice versa. Source is now available in GitHub: https://github.com/bmTas/cb2xml -
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rx2fits
HF/VHF spectrosopy code for the rx888mk2 direct-sampling receiver
...This code is for the direct-sampling input of the receiver, which transmits real samples over USB3 at up to 130 MHz sample rate. rx2fits processes these samples to spectral intensities via a Fourier-transform poly-phase filter bank, which provides spectral resolution approaching the spectral bin width with good stop-band and adjacent-channel rejection. Sample rate, Fourier bin count, PFB frame count, integration time and receiver gain parameters can be set. Utilities for device enumeration, firmware upload, display of FITS header, file viewing, and for measuring sample rate and sample statistics are provided. The device interface is Ruslan Migirow's librx888 and dropped samples at 130 MHz are negligible. Runs on linux computers under .Net. -
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The MolTools Java library provides tools for building applications that handle nucleotide sequence data. Features include sequence I/O, handling of lists/databases of sequences, calculation of Tm, and other utilities for sequence design.
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QMCF2
Quantum Mechanical Charge Field - Molecular Dynamics
...The source includes force-field, electrostatics, constraints, thermostats, pressure control, water models, QMCF/QM-MM, external-QM interfaces, conversion tools, and analysis utilities. Interfaces are available for xTB, DFTB+, Gaussian, Turbomole, CRYSTAL, and ASE-based workflows. External programs must be installed separately. Installation: open the Code tab and download or clone the complete repository. On Linux, open a terminal in `qmcf2_installer` and run: `python3 qmcf2_installer.py3` Review the detected compilers, libraries, paths, and warnings, then start the build. ... -
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sidmon5
VLF receiver for monitoring VLF transmitter signsls for evidence of tr
This linux package is a VLF receiver for monitoring VLF transmitter signals for evidence of transients indicating ionospheric disturbances. It takes sample pairs from dual-channel sound cards and spectrally processes them to Stokes parameters. -
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topographie cadastrale
utilities for cadastre system
set of scripts for making a cadastre system and maintenance -
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GromacsProSuite
Graphical User Interface for Gromacs
This tool is an integrated graphical interface that simplifies molecular dynamics simulations using Gromacs. It provides a structured, tab-based environment to set up, execute, and analyze simulations data without complex command-line operations. The software automates tasks such as topology generation, solvation, ion addition, minimization, equilibration, and production runs while executing GROMACS commands in the background. Built-in monitoring tracks CPU, RAM, and disk usage to ensure... -
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SCADA-LTS
A comprehensive Supervisory Control, Data Acquisition, and Execution
SCADA-LTS is an advanced FOSS, web-based, multi-platform environment designed to build your own Supervisory Control, Data Acquisition, and Management Execution Software - SCADA/MES. Its architecture provides a robust foundation for complex industrial automation and monitoring. Optimized for Smart Infrastructure, it is highly capable of managing industrial PV/BESS, Smart buildings, municipal Water networks or Wastewater treatment, ANPR telemetry, City-wide lighting, and other diverse data... -
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APTTools
A collection of utilities for atom probe tomography analysis
A collection of command-line tools for atom probe analysis including: * Point data XML scripting language, load, transform, resize and otherwise alter point data * Radial Distribution Function analysis tools * Level-set tools for simulating shape transformations during experiments -
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radiOS
Linux for Amateur Radio
...If it doesn't work as expected, or you would like to request additional functionality, please let me know. -This ISO is a live image but all the tools to install Arch Linux are included. -Right click anywhere for a menu. Connect to wifi via Network Manager in the System Utilities sub-menu. -As of 01JUNE2024 all packages have been updated, some have been removed due to difficulty in maintaining non-standard package dependencies, some useful links were added to Firefox, as well as a sample GRC for an SDR FM receiver. -
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com-hfg
java library for XML, HTML, or SVG generation + bioinformatics classes
The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8. -
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