Search Results for "http cgi"
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Showing 13 open source projects for "http cgi"
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hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
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ORSEE is a web-based Online Recruitment System for Economic Experiments. Key features: attribute query selection, random recruitment, experiment calendar, reputation system, automated mailing, pdf output, complete documentation.
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scnu
Fortran codes for SCNURS method - Side Cut Non-Uniform Residual Stress
...This project collects all codes which implement forward and inverse solution to the RS problem. The codes are in modern Fortran with OpenMP. The codes are distributed under 2-clause BSD license. The code uses Lapack (http://netlib.org/lapack), Slatec (http://www.netlib.org/slatec) and CMLIB (http://gams.nist.gov/cgi-bin/serve.cgi/Package/CMLIB) libraries. All these libraries are available as packages on FreeBSD. -
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miRStat
identification of common sets of microRNAs for groups of genes
...This Python application is based on the TargetScan 6.2 microRNA target prediction data. Conserved and Nonconserved site context+ scores files are required (unzip and place to directory with program). Available at http://targetscan.org/cgi-bin/targetscan/data_download.cgi?db=vert_61 -
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...For full details see http://ploticus.sourceforge.net Dec 2016: A new compact python API called SVGdatashapes supercedes ploticus; For details please see http://svgdatashapes.com
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GenNon-h
Simulating non-homogeneous multiple sequence alignments
...Based on the input model and a phylogenetic tree in the Newick format (with branch lengths measured as the expected number of substitutions per site), the algorithm produces DNA alignments of desired length. GenNon-H is a collaborative project described at http://genome.crg.es/cgi-bin/phylo_mod_sel/AlgGenNonH.pl. -
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T-lex
Transposable Element annotation using Next-Generation Sequencing data
...On top of the genotyping, this pipeline also allows to re-annotate TEs and discover traces of transposition events called Target Site Duplication (TSD). The other T-lex pipeline discovers and annotates de novo TE insertions. http://petrov.stanford.edu/cgi-bin/Tlex.html -
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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Distributed, object-oriented and event-driven LabVIEW based Control System Framework with some SCADA functionality. Documentation about the CS framework is provided via a dedicated web page, http://wiki.gsi.de/cgi-bin/view/CSframework/WebHome . Please note: This project is deprecated an no longer actively maintained. Please follow the link above for more information.
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Software to cluster protein sequences into functionally similar groups. Journal reference: http://bioinformatics.oxfordjournals.org/cgi/content/short/24/16/1765
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Webtunnel is an HTTP tunnel with some unique features: it runs in the context of a web server; it uses simple requests/responses for proxy traversal; and it is multi-threaded to allow many parallel connections to many destinations simultaneously.
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Software package for biological sequence analysis and better organization of the sequence data. Uses a modified version of alistat from Sean Eddy's group Squid package (http://selab.wustl.edu/cgi-bin/selab.pl?mode=software)
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Kaboum is an advanced java 1.1 applet that offers a user friendly interface to the mapserver cgi program (http://mapserver.gis.umn.edu). The displayed maps are made from a combination of mapserver output (gif or jpg image) with editable vectors layers.
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