Search Results for "gnu typing"
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Showing 18 open source projects for "gnu typing"
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GatcomSUMO
Automates the building of VANET simulations using SUMO and OMNeT++
GatcomSUMO is a multi-platform application that facilitates the building of VANET simulations using the SUMO traffic simulator and the OMNeT++ network simulator. The tasks related to the generation of abstract or synthetic scenarios, the download and conversion of network scenarios based on real maps (e.g. from OpenStreetMap), the route creation process, and the vehicles mobility modelling are integrated in a user-friendly graphical interface. This tool performs the necessary actions by... -
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PB-sQF_BacterialTyping
Bacterial Typing from either assembled or raw short reads file
Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain. The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/). The download included the library index, the library name and sample unknowns. -
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Discriminative Language Editor
Discriminative language editor based on ontologies
Text editor in Java that is able to detect discriminative expressions while the user is typing. When the internal ontology-based analyzer detects a potential discriminative expression the user is advised by underscoring the related words in the text. A descriptive message about the issue is also shown to the user when the cursor is placed over the potential discriminative expression. -
4
Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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5
PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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Linux Guist - Multi Lingual OS for Asia
A Single Click Language Changer and Publishing System for Web and DTP
Linux Guist - is a Multi Lingual Live CD OS for most Asian Languages, with the ability to run of a CD & Old Hardware, with just 128 MB Memory, for DTP, Web Publishing & Data Entry purposes. This will help IT employers to take up Govt. Projects that require Data Collection, Entry & Publishing at a very very low cost, while providing Training & Job Opportunities to numerous students of these languages, in the various towns, of the country. Talk to your respective IT/HRD ministry to identify... -
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multipsq
Analysis of pyrograms form multiplex pyrosequencing experiments
A software for the classification of organisms based on results from multiplex pyrosequencing algorithms performed on the Pyro-Mark ID System (Qiagen). The assays can be designed using the software mpsqed available from https://sourceforge.net/projects/mpsqed/ Pyrosequencing can be applied for Single-Nucleotide-Polymorphism (SNP)-based pathogen typing or for providing sequence information of short DNA stretches. However, for some pathogens molecular typing cannot be performed relying on a... -
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mesoFON
mesoFON is an individual-based mangrove forest model, a KiWi extension
mesoFON is an individual-based mangrove forest model. It is a Java implementation of the KiWi model done with RePast Simphony. It contains several new features: (1) You can add up to 10 species via the GUI. However, in principle, the number of species to be included programmatically is unlimited. (2) You can use a variety of growth functions via typing them in as a string on the GUI. (3) The model is transparent, sinc it comes with the Eclipse workbench of RePast. -
9
network packet generator
a simple packet generator for TCP,UDP and ICMP network packages
You can create different kinds of network packages e.g. ICMP echo request, echo replies, TCP packages with different settings, ... . You can start the programm by typing 'sudo ./start_pg2.sh interfacename'. The script is necessary to suppress the rst-packets from the linux kernel. I created this program to improve my C skills and to gain some experience in network programming. It is a early version and everyone is welcome to improve it ;). I´m from Germany so program and the comments... -
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10
mPSQed
Alignment editor and multiplex pyrosequencing assay designer
Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required for confirmation or typing. The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be... -
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ConvertAll is a measurement unit conversion tool. It allows units to be combined as desired. Units can be entered by typing or by selecting from the GUI.
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SpiffChorder
FW and HW design for a 7-key chording keyboard
Spaceman Spiff's Chording Keyboard Experiment (or SpiffChorder for short) is an experimental platform for creating a USB chording keyboard. A chording keyboard or Chorded keyboard is an input device where characters can be typed by pressing multiple keys at the same time. A popular design is the 7-key chorder, where one key is used for each of the index finger, middle finger, ring finger and pinky, and 3 keys for the thumb. This can be used with either the left or right hand (or a chorder... -
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GISpatialNet is a Java-based tool for mapping network data (nodes and edges between them) to spatial coordinates; reformatting network and spatial data together; and calculating spatial network measures. Install by saving to c:\ drive and typing the following in a command line: java -jar c:\GISpatialNet-0.9b.jar
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Formulator MathML Editor is a mathematical expressions editor of Presentation and Content MathML. Formulator makes it simple to develop software, keenly aware of the mathematical typesetting and semantics rules, and able to calculate simple formulas.
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Solubility provides a GUI allowing users to develop regression models to predict the aqueous solubility of a molecule. Users can choose or create descriptors and/or atomic typing parameters, train the model, and apply it to large databases. 100% Java.
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A wxWidgets-based project aimed to make math-typing, plotting and symbolic math easier; user can easily input, plot and save/load math data in various formats (e.g. MathML). Step-by-step resolution makes this a powerful didactive tool.
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ganc is a powerful gnome2 based algebraic calculator. It supports all basic arithmetic operations and functions, definition of variables and handling of numbers in any base. Input can be entered by typing or by using the provided keypad.
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STARS is an alternative interface to staden for studying polymorphisms in short sequences with batch processing, manual editing, trace viewing and data management. STARS was initially designed for Multi Locus Sequence Typing of bacteria.
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