Search Results for "extraction"
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Showing 144 open source projects for "extraction"
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PDFMathTranslate
PDF scientific paper translation with preserved formats
PDFMathTranslate is a Python-based tool that uses AI translation to convert academic PDFs into bilingual (e.g. Chinese-English) documents while preserving formatting, including math notation. It supports OCR-enhanced content and offers CLI, GUI, Docker, and Zotero integration under AGPL v3. -
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broom
Convert statistical analysis objects from R into tidy format
broom is part of the tidymodels ecosystem that converts statistical model outputs (e.g. from lm, glm, t.test, lme4, etc.) into tidy tibbles — standardized data frames — using functions tidy(), glance(), and augment(). These are easier to manipulate, visualize, and report programmatically. -
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Papers We Love
Papers from the computer science community to read and discuss
Papers We Love (PWL) is a global open source community dedicated to reading, discussing, and sharing influential computer science research papers. The repository serves as a curated directory of academic papers that have shaped the field of computing, providing a centralized location for documents that were previously scattered across various online sources. While licensing restrictions prevent hosting all papers directly, PWL offers links to their original sources and clearly marks hosted... -
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librsb
A shared memory parallel sparse matrix library including Sparse BLAS.
...The most common operations necessary to iterative solvers are available, e.g.: matrix-vector multiplication, triangular solution, rows/columns scaling, diagonal extraction / setting, blocks extraction, norm computation, formats conversion. The RSB format is especially well suited for symmetric and transposed multiplication variants. On these variants, librsb has been found to be faster than Intel MKL's implementation for CSR. Most numerical kernels code is auto generated, and the supported numerical types can be chosen by the user at build time. ... -
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GeoDMA
Geographic feature extraction and data mining
GeoDMA is a plugin for TerraView software, used for geographical data mining. With a single image, the user can perform segmentation, attributes extraction, normalization and classification. -
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CERCA
CERCA – Citation Extraction & Reference Checking Assistant
CERCA is an open-source research tool that supports the verification of bibliographic references in scientific manuscripts. It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control -... -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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STRIKER-GUI
Refine the spectral library to enhance its completeness and coverage.
STRIKER is a tool for correcting spectra with missing or incorrect adduct annotations. It also enables efficient construction of an HMDB-based spectral library and extraction of sublibraries from large spectral libraries. -
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The auditory modeling toolbox (AMT) is a Matlab/Octave toolbox for the development and application of auditory computational models. Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages,...
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bmrblib
The BMRB library
Bmrblib is a Python API abstracting the Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/). It allows the writing of NMR-STAR files for BMRB data deposition and the reading and easy extraction of data from files residing in the BMRB data bank, all without knowledge of the Self-Defining Text Archive and Retrieval (STAR) format. -
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[ARCHIVAL] The central forum for the MWE community. Share your open-source data sets and MWE extraction tools, exchange ideas on evaluation strategies and further development of the tools, and discuss theoretical definitions and linguistic properties of MWEs.
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PoseidonQ - AI/ML Based QSAR Modeling
ML based QSAR Modelling And Translation of Model to Deployable WebApps
- This Software was made with an intention to make QSAR/QSPR development more efficient and reproducible. - Published in ACS, Journal of Chemical Information and Modeling . Link : https://pubs.acs.org/doi/10.1021/acs.jcim.4c02372 - Simple to use and no compromise on essential features necessary to make reliable QSAR models. - From Generating Reliable ML Based QSAR Models to Developing Your Own QSAR WebApp. For any feedback or queries, contact kabeermuzammil614@gmail.com - Available on... -
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The 3D Toolkit provides algorithms and methods to process 3D point clouds. In includes automatic precise registration (6D simultaneous localization and mapping, 6D SLAM) and other tools, e.g., a fast 3D viewer, plane extraction software, etc.
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JWST MIRI and NIRCam imaging Pipeline
After 4/15/26 this project will be archived as 9 pipelines are con.
...Features Multi-instrument Support: Process both MIRI and NIRCam data Background Matching: Automatic background leveling across exposures Cosmic Ray Rejection: Advanced cosmic ray identification and removal Seamless Mosaicking: Create continuous field mosaics from dithered observations Source Extraction: Generate segmentation maps and source catalogs Calibration-ready: Works with JWST pipeline products (_cal.fits, _rate.fits) Memory Efficient: Handles large JWST datasets q -
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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p3d
General data-reduction tool for fiber-fed integral-field spectrographs
p3d is a general data-reduction tool for use with fiber-fed integral-field spectrographs (IFSs); although, the spectrum viewer works with spectrum data cubes of any origin. The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP). -
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Library for ion optics, plasma extraction and space charge dominated ion beam transport.
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Seqs Extractor is a useful tool, and can reduce ambiguities in analyses which uses BLAST command ine, commonly in the next generation sequencing, Transcriptomics, Proteomics, etc and help extract BLASTed sequences and sequences that contains microsatellites. Seqs Extrator also turns the BLAST command line more friendly.
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The main purpose of this program is to provide functionality for extract hardcoded subtitles (hardsub) from video. It provides two main features: 1) Autodetection of frames with hardcoded text (hardsub) on video with saving info about timing positions. 2) Generation of cleared from background text images, which allows with usage of OCR programs (like FineReader, Subtitle Edit, Google Drive) to generate complete subtitles with original text and timing. For working of this program on...
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GXSM
Scanning Probe Microscopy Controller and Data Visualization Software
GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link. Based on several hardware options it supports... -
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NLIGA
Open source Matlab code for nonlinear isogeometric analysis
...Computer Aided Geometric Design, 2020, 80:101869. [2] Xiaoxiao Du, et al. Numerical implementation for isogeometric analysis of thin-walled structures based on a Bézier extraction framework: nligaStruct. Thin-Walled Structures, 2022,180:109844 -
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OpenVigil
Open pharmacovigilance data extraction, mining and analysis tool
...FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. ... -
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Tranalyzer
Tranalyzer flow generator packet analyzer moved to: tranalyzer.com
...A packet based "tshark mode" for detailed header and content inspection is improved for troubleshooting and security purposes. Flow based and packet based content inspection and extraction, better reporting, geo and organisation labeling, forensics support and encapsulation support such as ethip, teredo, anything in anything, SCTP, etc are new features of the 0.8.14. Checkout the tutorials: https://www.tranalyzer.com/tutorials -
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Aseryla2
Aseryla2 code repositories
This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/ -
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Linguistic Analyzer
The Linguistic Analyzer is a tool for corpus analysis and comparison
The Linguistic Analyzer (Almuhalil Alloghawy) is a free tool designed by a team from Al-Imam Muhammad bin Saud islamic university that can be used for corpus analysis and comparison in terms of the several linguistic characteristics, such as frequency lists generation, concordances, collocation extraction, the difference between two words, and keyword identification.
