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Showing 2 open source projects for "dh"
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easy-dhpsf
GUI for fitting 3D single-molecule images using the double-helix PSF
This package of MATLAB routines with accompanying GUI allows scientific users to measure the 3D location of single molecules when using the double-helix point spread function (DH-PSF) widefield microscope. Version 2 also includes code that facilitates combining localization data from two spectral channels using a locally-weighted quadratic 3D registration function Features - Double-Gaussian estimator is calibrated via an axial scan of bright immobile fluorescent emitters (e.g. beads) - DH localization is performed through template matching and subsequent double Gaussian fitting - Tiff stacks of SM images are analyzed using template matching followed by double-Gaussian fitting to extract estimates of the molecule positions - Two spectral channels are registered by generating a locally-weighted quadratic mapping function from control point pairs -
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libkine
A serial robot kinematics library
libkine --- A serial robot kinematics library. Feature: --- * [x] DH Paramters * [x] Homogenous transformation matrix * [ ] Screw theory * [ ] Rigid body velocity / Jacobian * [x] 3D Visualization with using STL files Dependencies: --- 1. VTK for visualization 2. Armadillo for matrix calculation 3. FLTK for the joint sider interface How to Install: --- 1. Make sure you have git-lfs installed 2.
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