Search Results for "bulk"

kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome...

http://loto.sourceforge.net/ hosts 4 projects of free software related to materials science and physics. They are loto, feram, compasses and xtalgrowth.

AICtools is a GIS workflow and set of tools to facilitate Automated Imagery Classification (AIC) and analysis of surface features over time. Allows bulk processing of large data sets, including automated metadata processing/filtering, compressed archive extraction and file manipulation, raster band compositing, pre-processing, mosaicking, clipping. Automates a subset of operations involved in classification of satellite imagery and the associated raster calculations used for time trend analysis.

... pipes. Interfaces accessible via commands and scripts: file i/o modelled on stdio and stdlib; usb control and bulk transfers; socket operations; webcam; graphics via framebuffer. Applications (not all available yet for download) include: cell poker (like an atomic force microscope); tissue mechanical tester; fluorescence photobleaching; alternating laser excitation fluorescence; fluorescence intensity distribution analysis; iverilog simulation analysis.

NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include...

xeo is a free (GPLv3) open project management for nanostructures using Java

Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting...

This is a project dealing with particle physics, in particular lattice gauge theories. Gauge theories are incredibly important in current theoretical research and allow for the seach of symmetries. The bulk of the project will consist on a LaTeX document that tries to explain the concepts at hand. Some MATLAB/Octave code might be used to illustrate some problems.

A plug-in for Abaqus FEA with empiric data for many types of materials (linear, nonlinear, ortotropic). A simple GUI for creating properties for common materials and sections for bulk and shells.

A simple but powerful bulk file statistics calculator. Given operation(s) and a list of files containing identical text fields and corresponding numerical fields this program calculates and outputs a similar file with the numerical op performed.

Shell-scripts for the conversion & visualization of time series in raw MBDyn-ASCII-output format resulting from MBDyn multi-body-system simulations . Forms a minimalistic interface to make post-processing of MBDyn-bulk-data easier and more comfortable.

USb in Userspace, is a generic usb driver. It try to hide usb work exposing at user space level simple objects like file, where readers contend for data. Support cntl/intr/bulk/isoc endpoint. I, Salvatore Lionetti, am looking4ajob

the pIG bulk-processes data files generated by 'popular' scientific behavioural programs, including Med Associates MedIV-PC, Coulburn TruScan and Kinder Scientific.

The BGSSJ allows for easy and interactive querying using different gene identifiers (GenBank ID, UniGene, SwissProt, gene symbol), generates a summary page with listings of the frequencies of Gene Ontology annotations for each functional category (cluste

TCL Geolog Xplots of VP,VS,IP,IS, VS diveded by VP, POISSON'S RATIO, MU*RHO, LAMBDA*RHO LAMBDA/RHO, SHEAR MODULUS, YOUNGS MODULUS and BULK MODULUS and COMPRESSIBILITY logs given only three inputs 1) DT sonic log 2) DTS shear sonic log 3) RHOB densit