Search Results for "batch program"
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Showing 13 open source projects for "batch program"
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astap program
Stacking program, astrometric (plate) solver, fits file viewer
ASTAP, Astrometric STAcking Program, astrometric solver and FITS image viewer. This program can view, measure, "astrometric (plate) solve" and stack deep sky images. Main features: - Stacking of astronomical images including dark frame and flat field correction - Native fast astrometric (plate) solver. - Alignment using an internal star match routine, internal Plate Solver, manual or ephemeris. - FITS viewer with swipe functionality, deep sky and star annotation,... -
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ransfoil
console to calculate airflow around an airfoil based on RANS approach
RANSFOIL is a console program to calculate airflow field around an isolated airfoil in low-speed, subsonic, transonic or supersonic regime by numerically solving the Reynolds averaged Navier-Stokes (RANS) equations using mature computational fluid dynamics (CFD) method. As postprocess results, the aerodynamic parameters of the airfoil, e.g., lift coefficient and drag coefficient, can be integrated from the airflow distribution near wall boundary. In addition, the coupling between airflow and... -
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Side Cutters
Free CAD software
...Windows operating system functionality is never used, and the application is not on the Windows API but the GTK 3 API. This project will have no build system other than a simple *batch* or *bash* file. Its only dependency will be GTK 3. ## A table The user of the program will select components and edit the connections between them. This is done in a **table** He will press the *Generate* button with the *Side Cutter* icon and all the drawing's pages are generated automatically. -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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PhEq_bootstrap
FDA's f2 computation with bootstrap technique
This program was developed as a help in establishing pharmaceutical equivalence by use of FDA f2 coefficient. It was designed to help with f2 computation in cases when intra- and inter-batch variability is large, namely RSD>10%. The use of statistical bootstrap technique allows to implement confidence interval (CI) into the f2 coefficients resulting in overcoming of their major drawback in the original metrics. -
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases. -
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OMR Reader
OMR Sheets Data Retrieval Software
OMR Reader is an application to read data from scanned images of OMR sheets. You can first create a template for a particular form and save it as a .omr file. To create a template, use a form with all filled marks. The program will automatically detect the marks. Now choose the marks for a group, and name the group. Do this for all the option groups on the form. Now save the info of these groups in a .omr file. For different forms, you can have different .omr files. These files can later be used for batch processing the scanned images of OMR sheets. ... -
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Seqshell
A JAVA GUI for performing the function of Tophat and Cuffdiff
Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system. By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines. New functions: Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders. An alert email will be sent to your email address when the job is done. ... -
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
...RNA seq programs included are TopHat, CuffLinks, CuffDiff, CuffMerge, FastQC, and trimming using the FastX toolkit. DressUp facilitates RNA seq programs by streamlining various packages into a single script. That script executes the RNA seq programs on a batch cluster system. Upon execution of the script, jobs are submitted to the cluster depending on attributes set up in the configuration file. Program options can be modified in the main script "DressUp", and PBS options can be modified from the HeaderFiles directory. -
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A batch primer selection program designed to select PCR oligos for gap closure for assemblies containing a large number of gaps. BOSS will select oligos for gap closure of both contig and scaffold gaps. See readme for details.
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This program is a User Interface to run command-line applications in any python-enabled system. Batch execution is available for files in a folder or in subfolders.
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This project has adopted a parser for the output of SimIt-ARM's sema_count program. It is useful to get statistically relevant information from the output of a batch run of the simulator.
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