Search Results for "automation workflow"
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Showing 2 open source projects for "automation workflow"
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LAStools
efficient tools for LiDAR processing
LAStools is a collection of efficient, multi-core, scriptable tools for processing LiDAR data. It supports various formats, including LAS, LAZ, Terrasolid BIN, and ESRI Shapefiles, providing a comprehensive suite for LiDAR data management and analysis. -
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of...
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