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The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.
JMathLib is used to evaluate complex mathematical expressions and display the results graphically. It can be used either interactively or to interpret script files (m-files). It is a clone of Matlab, Octave, FreeMat, Scilab but written 100% in java.
BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.
JFlightLog is a FREE, graphical pilot log for Ms Windows and others(it's java). Saves as Excel XLS, PDF, CSV or TXT. Imports CSV from other logbook programs or spreadsheets. Prints entries directly. Auto-creates charts for visualizing flight times.
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The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.
KEManager models Knowledge Based Systems following a methodological approach ( Knowledge Engineering) for academical purposes of CommonKADS and IDEAL. It supports the viability test, some knowledge acquisition techniques and conceptual modeling.
This project is the development of a Selection Tool primarely used in ImageJ and possibly in GIMP. It is based in LiveWire and SNAKES methods and will firstly be used in IVUS (intravascular ultra sound) images.
The main goal of this project is the development of an IFX Transaction Switch that handle particular devices like an ATM (J/XFS compliant), POS in the future, and other devices that speak a common language: IFX
AKtive Media is an ontology based cross-media annotation (Images and Text) system. Our goal is to automate the process of annoation by suggesting knowledge to the user in an interactive way while the user is annotating and hence minimizing user effort.
Our software can test for HLA allele and amino-acid differences between two populations. It examines zygosity, tests for strongest association, interaction & linkage disequilibrium among amino acid epitopes.
A platform for setting up autonomic services in a distributed environment. Provides service discovery, service provisioning / usage, autonomic adaptation to the context, mobility, support for supervision and service aggregation, and more.
GuiTAR stands for "General-purpose Tool for Anaphora Resolution".
It was developed in Java at Essex University.
(see http://dces.essex.ac.uk/research/nle/GuiTAR/)
This project aims to make open source tools for medical Studies of Diagnostic Accuracy, wich are neglected by most commom statistical tools.
Most tools will be based on the STARD.
JLongTCPConn is a developing toolkit for TCP connection and session. It does the jobs of TCP processing (such as login, session maintainment, active-test or heartbeating, and data buffering), which makes you focus on application layer logics.
User friendly PDB (Protein Data Bank) file editor with graphic user interface for protein crystallographers to expedite selective parallel edit / data extraction / analysis of their PDB files
Goal of our project CSX (City Stats X) is to program a generic interface to visualize and present social data about a city. We will present this on the example of the city of Linz in Austria.
Mathematics, Chemistry and Bio-informatics semantic knowledge editor and simulation environment. It should serve as interactive science learning program or science classroom notebook and workshop.
The application „StockNews“ is to offer the possibility to the user to find out about the interaction between news, analyst opinions and stock exchange rates. Statistics and other relevant data about enterprises are available.