WebPagesChanges provides a platform for complete, easy and high accuracy marking of updated information in web pages. The user, with one click, can check for new information and see the update status by the colored mark of the information and their pages
Geneview is a visualisation tool to display genetic sequence data stored in nucleic sequence databases like <A HREF="http://www.ncbi.nlm.nih.gov/Genbank/">GenBank</A>.
The Systems Biology Research Tool (SBRT) is both an application and an application programming interface (API) intended to facilitate the computational aspects of systems biology.
PetriKit is a modular toolkit for Petri Net analysis. It allows the extraction of basic properties, extraction of invariants, and generation of reachability graph. Results can be formatted in plain text, HTML or XML files.
oBrowse is a web based ontology browser developed in java. oBrowse parses OWL files of an ontology and displays ontology in a tree view. Protege-API, JSF are used in development.
eXtace is a 3D audio visualization tool (or eye candy depending on how you look at it). eXtace requires ESD (Esound) for its sound input source. It performs a FFT (fast fourier transform) on audio and displays it via various graphical modes.
Java visual aplication to show graphs. JWykres get data from dabases by jdbc. Aplication can show many dataset on one graph for easy comparison, for example to find interrelation beetwen processes or finding trends.
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SSG-Generator (formerly Scheduled Sequencing Graph Generator) is a simple, open-source, academic software written to understand fundamentals of High Level Synthesis of system design.
The CheckCML project is a collection of modules for the production and checking of chemical experimental data represented as CML. The core CheckCML library provides classes for the checking process; tools such as OscarData allow for the production of CML
JFunctionViewer is a simple and fast OpenSource function plotter. Since it is written in Java it is Platform independend and can even be run from inside a Browser.
FVS is a cross-platform 2-D image and 3-D object analysis library. It is intented for use within content-based retrieval systems to facilitate retrieval of "similar" images or objects to a given query image or object.
The metabolomics standards initiative (msi) will develop a Core Information for Metabolomics Reporting (CIMR) recommendation and a more formal and semantically defined corresponding ontology (msi-ontology).
This project aims to provide a common building block for projects such as
ADEFU, SEA and VISUAL and other scada projects so that they have a common
interface to the PLC\'s they communicate with.
PLC\'s are Programmable Logic Controllers built to
JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts
MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
n-squared is a light weight, super powered note pad application that stores notes in an embedded database for easy searching. It has a tabbed interface, syntax highlighting, encryption, and more!
networks.tb is a suite designed for analyzing socio-semantic networks, in a dynamic framework. It also features tools for computing Galois Lattices in such networks and importing MedLine bibliographical databases.
Xcarecrows4MDA provides a complete toolset to build models and check their behavior for standalone applications or whole systems with a hierarchical, state driven approach. A test component checks the safety of the model under various situations.