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VELMA stands for Visualization & Exploration of Large Multiple sequence Alignments. VELMA is a Java tool for visualizing alignments of large numbers of biological sequences that exceed the capabilities of existing software.
Implementation of algorithm from paper 'Numerical Approximation of Option Premia in Displaced-Lognormal Heston Models' by A Dickinson. For code: click link under 'Develop' & checkout via svn or click link under Browse Code->SVN & download tarball
FLXLab is a program for running psychology experiments. Capabilities include presenting text and graphics, playing and recording sounds, and recording reaction times via the keyboard, joystick/button box, or a voice key. Windows/Mac/Linux.
A collection of various small routines for scientific purposes, completely implemented in standard C++. The license type depends on the specific routine.
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The software package SINSEL («SImulator New of Solution Equation of Landau») is designed to fit a one and multiple oscillating peaks spectrums with the new solution of the kinetic equations of Landau.
ECL is a system-level specification language for HW/SW designs and is based on Esterel and C.
The ECL compiler parses ECL, writes Esterel and C, and uses the Esterel compiler to produce an implementation.
Originally developed at Cadence Berkeley Labs.
C2Mat is a simple wrapper library that allows OpenCV data structures to be transferred between C++ and Matlab. It lets a program combine the speed of OpenCV with the power of Matlab.
HephaisTK is a toolkit for rapid prototyping of multimodal interfaces. HephaisTK uses SMUIML, a simple markup language for describing human machine multimodal interaction scenarios and integration mechanisms.
BinScan is a graphical tool to analyze the library dependencies of binaries. It integrates both tools "ldd" and "nm" into a single GUI frontend. it displays the library dependencies of executables and the symbols it references in shared libraries
Geom4J is a computational geometry library for Java. It contains implementation of the most important computational geometry data structures and algorithms coded in pure Java, designed for ease of use and optimized for performance.
BioSpring is a molecular simulation software based on a spring network model, including non-bonded interactions, especially designed for Interactive Molecular Dynamics.
It incorporates MyPal for locating ion binding sites and IMPALA for interactive placement of membrane proteins in a membrane environment.
Context-awareness is a key concept in ubiquitous computing. The Java Context-Awareness Framework (JCAF) is a Java-based context-awareness infrastructure and programming API for creating context-aware applications.
A major mode written for GNU Emacs 22.1 to edit PML files (*.pmlobj, *.pmlfnc, *.pmlfrm and *.mac). PML is the programming language used in Aveva PDMS (Plant Design Management System) to interact with the database, design new objects and run macros.
SPLITNEURON is a completely new approach to large-scale, biologically plausible, neural-network simulation library based on data structures and methods directly coded into database and conceived to explicitly share load on multiple machines.
A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
Daniel Farinha's personal open source repository. This is the place for Dan's sandbox, small utilities, libraries, and other personal projects at incubation stage.
A small command line tool to process streams of numbers and spit out the running total, bin the results or merge duplicates. Supports arbitrary precision numbers. ocdf is named for the cumulative distribution function in probability.
Create Wincc Flexible alarms from Data Blocks of Simatic Manager
This is an application for creating alarms and PLC tags for Wincc Flexible (Siemens HMI Software) from one or several Data Blocks (DB) of the Simatic Manager. The application creates two files that can be imported in Wincc Flexible.
Development stop on the standalone application, ported as an autopsy module now: http://www.4ensics.co.uk/smutdetect4autopsy/
SmutDetect is a skin-tone image mining software which scans directories for images containing a specified percentage of skin-tones. It ranks (and filters) these images in various reports. Hash-export can be used to process the results in TSK/autopsy.
This is a network simulator. This is meant to be user friendly as well as feature rich. This field lacks software with good user interface. Even the commercial softwares in this field is quite lame. This aimed to go along Multisim(R) and Blender(R) form
This tool aids the assessment of physical performance of athletes by clocking jump and ground contact duration. This software is used to clock, calculate, and visualize the performance.