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TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.
pyDATR is an implementation of the DATR language written in Python and usable as Python library. It provides a means for persistence and some extensability with Python functions.
C++ and Python based open source graph visualization and analysis software, primarily intended for use in the analysis of social networks (other applications are also conceivable).
Deploy in 115+ regions with the modern database for every enterprise.
MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
Graphical or terminal-based stopwatch with many user-named lap timers. Save / restore timing results via CSV file; timer "runs" even when application isn't running! Supports lap timer label templates. Hildonized (i.e., also runs on Maemo / Nokia 770).
Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
GIRAFFE Base Line Data Reduction Software is a set of python scripts and modules
and a C library to reduce FITS images produced by the Very Large Telescope (VLT)
FLAMES instrument.
An object-oriented partial differential equation (PDE) solver, written in Python, based on a standard finite volume approach and includes interface tracking algorithms. *WARNING* The project is no longer using Sourceforge to maintain its repository.
The Engineering Type Library 2 intends to fill the gap between the numerical core and the user interface of engineering applications. It provides a set of datatypes (numbers, tables), physical unit processing, expression interpreting and related services
We experiment with Evolution of Artifical Neural Networks, combining the two fields of Evolutionary Computation and ANNs. Our methods are applied to a variety of interesting problems. To learn more, click on "Home Page", "Mail", or "Files".
FormatCheck screens flat files looking for violations in the format of the data. It uses a set of XML files that define the rules for each file format. The Swing front-end allows the user to run the verification, view and print the errors.
Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.
A plug-in for the Eclipse and NetBeans IDEs for experimental use in the development and testing of Automation Objects (AOs) for industrial automation and control.
...Serves maps realtime and/or saves them to disk. Can read ESRI Shapefiles and GPX files. It streams, saves, or returns an image via the GD library. It is controlled by an easy to learn XML config document.
PROMI is a Platform for the Reuse of Ontologies through Merging and Integration. It imports ontologies represented as OWL, RDF(S), DDL, DTD and XML schemas and incrementally merges their contents using various matching algorithms.
Tk-based standalone graphing system and extensible graphing library with a huge range of 2d modes (maybe 3d soon?) written in Python (Python/Tk are 100% cross platform)
The BioSchemas project develops XML schemas for the exchange of biological data e.g. through SOAP-based web services. It is a collaborative and open project intended to increase the interoperability between bioinformatics applications.
"Open SysAME" stands for Open-source Systems Analysis and Modeling Engine. Using the concepts developed by Dr. John Warfield (Interactive Management) and George Chandy (OPMS), Open SysAME facilitates collaborative modeling and analysis of systems.