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LaJolla can perform 3D alignments of RNA and protein structures. It is fast, simple to use and well tested. LaJolla is successfully published in a peer reviewed journal.
!!!!!! PROJECT MOVED TO GITHUB !!!!!!
Please check out http://raphaelbauer.github.io/lajolla/
Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
A Simple and Efficient Framework for Infinite Resolution Simulation; provides a Java Thread-like class that executes over simulated time. Time units are user-definable, no time quanta, and neither changes to the VM nor pre-processing are required.
AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
This is a set of business math tools. The intended users are American business students. Some features include interest calculations, mortgage payment calculations, markup and markdown calculations and others.
This is a reference implementation of snoBAC, a Bayesian Classifier designed to predict box H/ACA snoRNAs in Caenorhabditis nematode genomes. For details of algorithm and data, see Wang and Ruvinsky (2009) RNA in press.
An open tool, tied to www.hobbybirra.com, to formulate, manage, preview homebrewing recipes, upload them to a common repository, and share them with other homebrewers. Latest official releases on http://www.hobbybirra.it/hobbybrew/
JRandO is a test data generator or better test object generator framework. It can be used in JUnit tests or in performance test (for e.g. using JMeter). It may also be useful in anonymization of data or in a simulation environment.
Geo Sus is a software suit for use with the Bartington MS2 magnetic susceptibility meter. It was developed for the Victoria University Wellington Geophysics department to help out in their work. Created by team Geodudes in SWEN302 T2 2009
JMulTi is an interactive software designed for univariate and multivariate time series analysis. It has a Java graphical user interface that uses an external engine for statistical computations. It uses the framework JStatCom.
SimpleWFS is a 100% Java servlet implementation of the draft OGC standard Web Feature Service (WFS) Simple. This is a Web service interface whose goal is to specify a common, minimal feature set for geospatial-temporal data access.
National University Community Research Institute's NU KEEPERRHHATT Algorithmic Framework is a series of meta-algorithms based upon the Longest Hamiltonian Path Problem for finding high level explanations to social, economic and political behaviour.
OpenBRR2 project focuses on the re-write of the original "OpenBRR - Data" (http://sourceforge.net/projects/openbrr) project. The aim is to develop a hosted data aggregation application for all F/LOSS projects.
The new Visual Database Configuration Tool (VisualDCT) is a visual database creating and editing tool for EPICS v4 and EPICS v3 with capability to interact with IRMIS RDB that contains information about the operational EPICS IOC's.
Geoplan-Geospace is a 2D and 3D interactive geometry software to create and manipulate interactive figures for eLearning. It features euclidean geometry objects (lines, circles), numerical functions, numerical sequences, geometrical transformations.
GOOD NEWS: The functionality provided by this utility is now part of Kicad itself. Well done Kicad team. Keep up the good work. ------ This utility takes an input DSN file, exported from Kicad for example, and enables the user to assign various thick
A sorting tool for Bioinformatics, Biochemistry and/or Molecular biology. This sorts nucleotide sequences aligned using "ClustalW". There may be a way to do this w/ original app, but someone I know couldn't figure out how - thus this project was born
Mad Math is a Math API for Java that is aimed at adding needed math functions and formulas that are not in the regular Java Math API, such as fibonacci sequence, is prime, area formulas, greatest common factor, least common multiple etc.
The Time Series Toolbox is a set of software components that simplify the task of building applications that record, process, store and publish time series of observations. Current main application area are sensor networks.