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The Evolutionary Environment Simulator (EvESimulator) is an agent-based economy simulation framework which provides a broader view on evolutionary aspects within a Digital Business Ecosystem.
DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).
Example-based Modeling (EMO) is an tool to create data models, with examples, using a web interface. You interactively create a web-accessible database of models and samples for those models. A white paper describes the underlying assumptions.
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It's a utility application for updating and integrating translation memories, created by the Autshumato ITE, over a network. Licensed under the TMate Open Source License and free to download and be used by anyone.
A software to store, (PUT) meteorological data from complex free form text format to databases and and GET stored (and already loaded) data from databases using OPeNDAP protocol. Written using Java6, XSD, and C++. It support OPeNDAP clients thanks to
Simple UI to test the effectiveness of a heuristic algorithm against the brute force method for path finding among an arbitrary number of arbitrarily placed points on a grid. This is an educational project, don't expect new and better methods.
Ex-Crawler is divided into 3 subprojects (Crawler Daemon, distributed gui Client, (web) search engine) which together provide a flexible and powerful search engine supporting distributed computing. More informations: http://ex-crawler.sourceforge.net
Tsunami is an open-source high performance computing language. With it you can write streaming data-parallel algorithms that utilize GPGPUs for orders-of-magnitude speed-up with the ease of writing sequential algorithms.
Open data mining platform. Provides common architecture for algorithms of various types. Efficient processing of arbitrarily large volumes of data thanks to data streaming. Weka and Rseslib partially integrated. (www.debellor.org)
A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
TRINDIKIT is a toolkit for building and experimenting with dialogue systems based on information states, that has been developed in the TRINDI and SIRIDUS projects.
OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.
GEM is a computational method for identification of transcription factor modulators, using expression datasets. The method tests if the correlation between factor and target gene depends on the expression of the modulator.
The development and curation of a range of XML-based tools
for using Chemical Markup Language (CML), including
XSD XML Schemas for validation, datatyping and constraining CML
documents and XSLT Stylesheets for transforming, filtering and rendering.