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This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.
The BioSimz project aims to deliver a library (as well as the interface) to conduct large-scale biomolecular simulations at their atomic scales of detail. The initiative idea is to observe the protein crowding in vivo; it now can do much more than that!
ODSSA - is a system for storing, searching and viewing spatially and temporally indexed photos, videos, GIS tracks, ESRI shape, and other files. It consists of an import tool, open API Server, browser based Client for search and viewing files.
An open-source desktop application for load/performance testing a web site. It has a very simple UI to configure the load test. The future plan includes transaction support, record, playback and support for load injector agents.
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TreeViewJ is a Java tool for visualizing, editing and analyzing phylogenetic trees. The software allows researchers to color and change the width of branches, and add names to nodes. Collection dates can be mapped onto a timeline, and sorted.
The linkFlow computer software program enables the user to perform civil hydraulic design tasks in a manner similar to a calculator. Vegetated and reinforced channels of any section can be designed using allowable shear and variable n values. c 2010
A Matlab toolbox for interfacing with the pure JAVA numerical library Snifflib. This toolbox provides convenience m-files for interoperability with Snifflib from within an active Matlab session running a JAVA virtual machine.
A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
A universal navigation system for most kind of mobile phones, smartphones, portables and laptops for different kind of navigation: car/bicycle/pedestrian navigation, geocaching and maybe more.
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A basic quadratic equation calculator written in Java with a command-line interface. Handles fractions and imaginary roots. Thanks to Doug Lea at SUNY Oswego for his work on the Fraction class.
IPC 175x Utilities is a collection of software tools to support the IPC 1750 series of supplier declaration standards. These utilities are being developed to help electronics industry supply chain stakeholders implement the IPC 1750 series of standard.
The InfoVis Toolkit is a Interactive Graphics Toolkit written in Java/Swing to ease the development of Information Visualization applications and components.
Clados is a java package that implements a multivector in a Clifford Algebra. Algebras (over real numbers) with any signatures may be used. A calculator and associated documentation is also included to help users learn how things work.
BorderFlow implements a general-purpose graph clustering algorithm. It maximizes the inner to outer flow ratio from the border of each cluster to the rest of the graph.
Plexus is a Java library with specifications and implementations for generic graph data structures. Like the Java Collections Framework, vertices and edges are containers for arbitrary user-defined objects.
JCrocus is a GUI (Graphical User Interface) that allows representing the network topology definition of microwave cavity filters based on the coupling matrix approach as well as simulating and plotting its frequency response
A java interface to the open source LabRAD framework for distributed instrument control and data acquisition. JLabRAD facilitates rapid development of client/server LabRAD applications.
MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
A Java library that works with Java3D to simulate and visualize, in real-time, dynamics of multiple rigid bodies that are restricted by implicit and explicit constraints (e.g., robotics); designed for efficiency, ease-of-use, and extensibility.
Maximum entropy is a powerful method for constructing statistical models of classification tasks, such as part of speech tagging in Natural Language Processing. Several example applications using maxent can be found in the OpenNLP Tools Library.
EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
Real time micro benchmark multi-lingual suite (RTMB) provides a good way to measure the deterministic quality of hardware, an operating system, or a Java Virtual Machine. RTMB consists of benchmarks in C, C++ and Java