Search Results for "sql command line" - Page 8
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Showing 2376 open source projects for "sql command line"
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The project builds a new AI of AIBO from scratch. Currently, I have a white ERS-7 model, Rakka. Project is based on Boost, Qt, OpenCV, other 3rd party software and my own source codes.
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ntx
Neutrality tests using the SNP site frequency spectrum
Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations. -
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The LaTeX Equation Compiler is a preprocessor for LaTeX files that enables numeric and symbolic calculations. It reads equations specified by special keywords in the LaTeX file, manipulates them and calculates numeric values of variables. If your OS can install .deb packages, have a look at my PPA http://launchpad.net/~jrheinlaender/+archive/ppa
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The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments for bacterial and archaeal 16S rRNA sequences, fungal LSU and fungal ITS sequences, with confidence estimates for each assignment. More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR....
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ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data.
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This software solves the Phylogeny problem using Median Networks. Exact and heuristic methods available. Input: an alignment and a reversible stepmatrix, output: (sub)optimal trees and their combinations. Steiner problem solver included.
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genppi
GENPPI: standalone software for creating protein interaction networks
Our software GENPPI is efficient because, for example, it creates interaction networks from the central genome of 50 species/lineages of Corynebacterium, with an average size of 2200 genes, in less than 40 minutes, on a conventional computer. Our software is compelling because the interaction networks that it creates reflect evolutionary relationships between species and obtained in Average Nucleotide Identity (ANI) analyzes. Also, It allows the user to define how he intends to explore the... -
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AstroBioTools
Adaptive analysis of amino acid alphabets
A new, fast implementation of algorithms used for the adaptive analysis of amino acid alphabets as described in Philip, G. K., & Freeland, S. J. (2011). Did evolution select a nonrandom “alphabet” of amino acids? Astrobiology, 11(3), 235-240. Ilardo, M., Meringer, M., Freeland, S., Rasulev, B., & Cleaves II, H. J. (2015). Extraordinarily adaptive properties of the genetically encoded amino acids. Scientific reports, 5, 9414. Ilardo, M., Bose, R., Meringer, M., Rasulev, B.,... -
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Dike-ED
Simulator for medical emergency departments
Discrete-event simulator for medical emergency department resource allocation. -
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polynomial-roots-calculation
Application for calculating the real roots of a polynomial
Application for polynomial roots calculation. The application does the job by supposing the roots of the derivative function are known. This way, we can delimit the range where each possible root is in, and by applying Bolzano's theorem, we can find the zeroes. It is not a very eficient way, as we must calculate al the derivatives of the polinomial, implying very high numbers (n!), that make the needed precision increase, making the computational complexity for high-degree polinomials... -
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and... -
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tools4vasp
Management and Analyzis of VASP calculations
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GatcomSUMO
Automates the building of VANET simulations using SUMO and OMNeT++
...The tasks related to the generation of abstract or synthetic scenarios, the download and conversion of network scenarios based on real maps (e.g. from OpenStreetMap), the route creation process, and the vehicles mobility modelling are integrated in a user-friendly graphical interface. This tool performs the necessary actions by invoking the set of utilities included in SUMO, saving the user from typing complex command-line orders. GatcomSUMO visualizes the network and routes easily, and they are created in such a way to meet the requirements of the involved simulators, in particular OMNeT++, in order to avoid misunderstandings and runtime errors. The application allows the conversion of the spatial coordinates used by SUMO into those used by OMNeT++, which is essential to place fixed elements like RSUs. -
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Aestel
Applications for data management
"Information is data in action", and, consequently, having good quality data is essential. The AESTEL package contains two highly configurable applications for data management: A data loader and a reporting application, i.e. DataLoader and AEREA, respectively. The data loader application applies user-defined instructions to validate, process and load data. The reporting application provides a query builder and spreadsheet template designer. Both applications work with any relational data... -
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Tiny Multi Bootloader+
Serial Bootloader for Microchip, Atmel, NXP, TI, 8051 microcontrolers
...It can program: - Microchip PIC10/12/16/18/24/32/dsPIC30/33 - Atmel ATtiny, ATmega - TI MPS430 - NXP ARM Cortex-M0+ - Silicon Labs C8051 And this: - with light modifications to the Bootloader firmware for new devices - without modifying your source code or using a special linker script - via GUI or command line prog - with automatic Reset -
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pfcalc is a pipe friction calculator using the Darcy-Weisbach equation. gpfcalc is a Gtk front-end for pfcalc. Qpfcalc is a Qt front-end for pfcalc.
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Seqs Extractor is a useful tool, and can reduce ambiguities in analyses which uses BLAST command ine, commonly in the next generation sequencing, Transcriptomics, Proteomics, etc and help extract BLASTed sequences and sequences that contains microsatellites. Seqs Extrator also turns the BLAST command line more friendly.
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Translate Shell
Command-line translator using Google Translate, Bing Translator, etc.
Translate Shell (formerly Google Translate CLI) is a command-line translator powered by Google Translate (default), Bing Translator, Yandex.Translate, and Apertium. It gives you easy access to one of these translation engines in your terminal. By default, translations with detailed explanations are shown. You can also translate the text briefly (only the most relevant translation will be shown). -
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xfemm
Cross platform electromagnetics finite element analyisis based on FEMM
Cross platform electromagnetics finite element analysis code, with very tight integration with Matlab/Octave. Development of xfemm now takes place on Github here: https://github.com/REOptimize-Systems/xfemm xfemm is a refactoring of the core algorithms of the popular Windows-only FEMM (Finite Element Method Magnetics, www.femm.info) to use only the standard template library and therefore be cross-platform. The codes can be used as a library, standalone executables, or through the... -
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Deal with the apparent contour of a regular 3D surface, i.e. the observer view of the points of the surface in which the normal is orthogonal with the view direction
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uac19
Analyze COVID-19 csv files
A flexible command line tool to analyze COVID-19 csv files https://github.com/nytimes/covid-19-data https://ourworldindata.org/coronavirus-source-data The rpm build is rh7 the tgz installs on Windows cygwin. -
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ESTScan is a program that can detect coding regions in DNA/RNA sequences, even if they are of low quality (e.g. EST sequences). ESTScan will also detect and correct sequencing errors that lead to frameshifts.
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GenForm
Generation of molecular formulas by high-resolution MS and MS/MS data
This is an open source implementation of molecular formula calculation by high resolution MS and MS/MS data as described in M. Meringer, S. Reinker, J. Zhang, A. Muller: MS/MS Data Improves Automated Determination of Molecular Formulas by Mass Spectrometry. MATCH Commun. Math. Comput. Chem. 65, 259-290, 2011. The software user manual is available here: https://www.researchgate.net/publication/307964728_MOLGEN-MSMS_Software_User_Manual Example MS and MS/MS data files for GenForm can... -
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Jljp
Calculates the voltage across a liquid junction between two solutions
An analogous project written in C# can be found here: https://github.com/swharden/JLJP Liquid junction potential calculator. It's a tool for scientists and engineers who have to do with electrochemistry and electrokinetics. When two solutions containing ions are put into contact, possibly through a porous diaphragm, a voltage develops across them. The calculation of the voltage is not trivial. The program is written in Java. Includes classes that can be included in other programs,... -
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Frame3DD
Static and Dynamic Structural Analysis of 2D and 3D frames.
FRAME3DD is a program for the static and dynamic structural analysis of two- and three-dimensional frames and trusses with elastic and geometric stiffness.
