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This software simulates cellular behavior based on specific rules (e.g. Game of Life or Wireworld). The UI will be replaceable and there will be a feature for importing rules from a file based on a format developed for this purpose.
Corra [BMC Bioinformatics 2008] is a computational framework & tools for discovery proteomics using label free LC-MS and ATAQS [BMC Bioinformatics 2011] is a computational framework & tools for validation proteomics using SRM LC-MS method.
OpenAstrology is Java based Object-orientated implementation of Astrology. OpenAstrology will provide a platfrom to plug-in in the knowledge of Astrology and the derived solution will be the best real time Astrology solution
GenoGUARD is a DNA sequence screening software that implements the best match method recommended by the federal government to detect the presence of biosecurity threats in synthetic DNA orders.
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The application for tracking a mobile devices, similar to google mobile maps but enhanced about many additional new features including a web service where
a user will be able to track registered mobile devices from a web browser.
Power consumption analysis tools for embedded systems. MARTE to AADL model transformation with ATL for tools interoperability. More info on the project at http://sourceforge.net/apps/trac/lab-sticc/
swIMP (swig-based Interfaces for Mathematical Programming) provides Java wrappers for solvers written in C or C++. The current focus is on accessing OSI-compatible linear programming (LP) solvers from the Coin-OR-project (e.g. Clp, GLPK, MOSEK, CPLEX).
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HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
Numerical math is tool that demonstrates numerical math methods. It includes following areas: interpolation, numerical differentiation, numerical integration, root finding, linear systems, non-linear systems, differential equations.
Tifad is a framework to deal with Natural Gas (NG) dispatching for thermoelectrical generation networks. Project blog can be browsed here: https://tifadframework.wordpress.com/
Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information
TagSEA is a framework for tagging locations of interest within Eclipse. Visit our project page for more information - including downloads and documentation: tagsea.sourceforge.net
GEAX is a Java application used to visualize and analyze cross-species gene expression microarray data.The program allows comparisons based on fold-change, p-value, quantile matching, or a combination of criteria.
SWARD (System for Weapon Allocation Research and Development) is a testbed for benchmarking weapon allocation algorithms against each other. It is intended for researchers within operations research, information fusion, and related areas.
A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.
TMAJ is software for Tissue MicroArrays (TMA's). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.
The system searches synonyms (and related words) in Wikipedia. WikIDF generates index database of Wikipedia (for Russian, English, and German). The continuation of this project is "wikokit" at code.google.com
Java based multi-agent platform built on an organizational model (agent, group, role). MadKit provides general agent facilities (lifecycle management, message passing, distribution, ...), and allows high heterogeneity in agents.