Showing 504 open source projects for "linux shell android"

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  • 1

    bspipe

    An End-to-End Analysis Pipeline for BS-seq

    BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files...
    Downloads: 0 This Week
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  • 2
    Drception

    Drception

    Fractals generator with powerful functionality.

    Fractals generator with powerful functionality. E-mail: programmingspecial@gmail.com
    Downloads: 0 This Week
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  • 3
    SpacePy
    Now maintained at github.com/spacepy/spacepy Space Science library for Python - contains superposed epoch classes, drift shell tracing, access to magnetic field models, streamline tracing, bootstrap confidence limits, time and coordinate conversions, etc.
    Downloads: 0 This Week
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  • 4
    Numerics for Chemical Engineering

    Numerics for Chemical Engineering

    Numerical models for chemical and process engineering

    NCE Calculation Framework is a library of routines, models and data applicable to chemical and process engineering calculations, written in Java. -- NEW -- www.chesolver.com *ONLINE CALCULATORS*. A set of solvers to perform calculations consistently on any device, from smart-phone to desktop. The project includes the following ready to use software all based on the same core library: * Online Calculators at www.chesolver.com * Extensions for Libreoffice/Openoffice Calc...
    Downloads: 1 This Week
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  • 5
    A shell for using the methods of Contextual Logic to do qualitative data analysis, mathematical research on the theory underlying Conceptual Knowledge Processing, or learning Formal Concept Analysis. It uses the framework provided by the Tockit project..
    Downloads: 0 This Week
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  • 6
    Accent Tool Suite

    Accent Tool Suite

    Accent interfaces and controls systems through goals and policies

    Accent (Advanced Component Control Enhancing Network Technologies) is a comprehensive tool suite that interfaces a variety of communications systems and allows these systems to be controlled through goals (high-level user aims) and policies (lower-level system rules). Accent has been applied to the domains of: o Call Control: for telecommunications, particularly call control in Internet telephony o Home Care: for home automation and telecare, particularly for domestic appliances...
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  • 7
    Quantum Honeycomp

    Quantum Honeycomp

    Interactive program to calculate electronic properties in graphene

    Calculate electronic properties of graphene-like systems with a user friendly interface. The code uses the tight binding approximation and it is able to stude in a 0D, 1D and 2D geometries, orbital and magnetic fields, intrinsic and extrinsic spin-orbit coupling, sublattice imbalance, and interactions at the mean field level. The most recent version can be found in https://github.com/joselado/quantum-honeycomp Example...
    Downloads: 0 This Week
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  • 8
    TEACUP

    TEACUP

    TCP Experiment Automation Controlled Using Python

    TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP...
    Downloads: 1 This Week
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  • 9
    owfs and owhttpd

    owfs and owhttpd

    Project moved to https://github.com/owfs/owfs/

    Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use...
    Downloads: 4 This Week
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    Gemini 3 and 200+ AI Models on One Platform

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  • 10
    LBXR - LOAD BLAST XML RESULTS O sistema permite que sejam importados resultados obtidos por meio de pesquisas de similaridade a partir do BLAST, com resultados gerado no formato XML para o banco de dados relacional MariaDB ou MySQL.
    Downloads: 0 This Week
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  • 11

    OpenRTDynamics

    A framework for implementing real-time control systems

    - - - T H I S P R O J E C T M O V E D T O G I T H U B - - - A framework for the implementation of advanced real-time control systems which uses signal/block-based schematics (like Simulink) extended by several features like state machines and online-exchangeable sub-simulations. Besides, this framework properly handles multiple threads, their communication, allows to synchronise control systems to external events (e.g. variable timers or incoming network packages) and provides...
    Downloads: 0 This Week
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  • 12
    This program takes NMEA, CSV, GPR or GPX logfiles from your GPS device, manages your tracks and exports them as KML to Google Earth. Investigate altitude and speed information, measure distances and cut tracks.
    Downloads: 0 This Week
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  • 13

    cxmon

    Access the Phocos CX/CXN-10/20/40 solar charge controller's logger.

    This is a minimalistic, portable command line tool, written entirely in BASH scripting language, for accessing solar charge controller's historical logs and current status information. It should be compatible with Phocos CX/CXN-10/20/40 solar charge controllers. It has been tested with CXN-40 operating in 12 V mode. The documentation can be found at the top of the executables. The tool is licensed under GPLv2. The protocol has been reverse-engineered on the author's own free time. The...
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  • 14

    lr2rmats

    Long read to rMATS

    lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/
    Downloads: 0 This Week
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  • 15
    aXonica

    aXonica

    An installation package for freeware bioimaging tools

    Download link: https://www.dropbox.com/s/jelbrho05m7yg8y/NeuroX_v.1.0.zip?dl=0 For Instructions Manual see Download section.
    Downloads: 0 This Week
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  • 16
    abumpack

    abumpack

    Fortran library with the Abaqus user material subroutines UMAT/VUMAT

    This library contains several of user material subroutines for implicit quasi-static (UMAT) and explicit dynamic (VUMAT) versions of the Abaqus solver. The project web site: http://abumpack.sf.net. The Abaqus is a proprietary finite element (FE) code ( http://www.3ds.com/products-services/simulia/products/abaqus/). Users can write subroutines for use with the Abaqus. Linear elastic, isotropic hardening plasticity, Gurson-Tvergaard-Needleman (GTN), Rousselier constitutive models are...
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  • 17
    Downloads: 5 This Week
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  • 18

    Semantic Assistants

    Natural Language Processing (NLP) for the Masses

    Semantic Assistants support users in content retrieval, analysis, and development, by offering context-sensitive NLP services directly integrated in standard desktop clients, like a word processor, and web information systems, like a wiki.
    Downloads: 0 This Week
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  • 19
    Logic Lab

    Logic Lab

    This is a suite of mathematical software solvers GUI

    This is a suite of mathematical software solvers interface on DLV and other command-line solvers. It helps researchers and students to better comprehend their declarative definitions published on papers. The user can have links to the related papers and to the software of the corresponding definitions.
    Downloads: 0 This Week
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  • 20
    Wi-Fi Ducky

    Wi-Fi Ducky

    Upload, save and run keystroke injection payloads with an ESP8266

    Upload, save and run keystroke injections remotely with an ESP8266 + ATmega32u4. Using a USB device that act as a keyboard to inject keystrokes is well known these days. The USB Rubber Ducky by Hak5 is THE hacker gadget for this kind of attack. It introduced a simple script language called Ducky Script, which this project uses too. The ESP8266 is a popular Wi-Fi chip used in a lot of projects. Because it's cheap, small, and has its own file system (SPIFFS), it's perfect for enabling an easy...
    Downloads: 2 This Week
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  • 21
    HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
    Downloads: 3 This Week
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  • 22

    Seqping

    Gene Prediction Pipeline for Plant Genomes

    Gene Prediction Pipeline for Plant Genomes using Self-Training Gene Models and Transcriptomic Data
    Downloads: 0 This Week
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  • 23

    QSdpR

    Viral Quasispecies Reconstruction software based on QSdpR algorithm

    This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
    Downloads: 0 This Week
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  • 24
    USBphpTunnel

    USBphpTunnel

    Android app for MXQ TVbox to control an Arduino board via USB from PHP

    Designed for data-logging applications (weather, hydroponics, greenhouses, aquariums, home automation, power consumpion, solar or wind generators etc.), this solution can be useful also in alarms and burglar. Now you can develop MySQL and web enabled Arduino applications only working on Arduino and PHP. To keep ligth the Arduino Sketch, you can port all not realtime logic to PHP side. At the end your application will works on XQ+Arduino UNO even 24/7 with only 20 Watt AC power, and can...
    Downloads: 0 This Week
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  • 25

    PADIC

    A multilingual Parallel Arabic DIalectal Corpus

    PADIC (Parallel Arabic DIalectal Corpus) is a multi-dialectal corpus built in the framework of the National Research Project "TORJMAN", led by Scientific and Technical Research Center for the Development of Arabic Language and funded by the Algerian Ministry of Higher Education and Scientific Research. PADIC is composed of 6 dialects: two Algerian dialects (Algiers and Annaba cities), Palestinian, Syrian, Tunisian, Moroccan) and MSA. Mourad Abbas Computational Linguistics Department,...
    Downloads: 3 This Week
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