Search Results for "c source code" - Page 69
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Showing 6989 open source projects for "c source code"
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UPDATE March 14, 2018 Repository and tracking officially moved to github. https://github.com/opticks-org/opticks Sourceforge mailing lists are still in use. Opticks is an open source remote sensing application and development framework.
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HiLive
Realtime Alignment of Illumina Reads - old repo
Please note that this repo is outdated! Please find the latest version of HiLive here: https://gitlab.com/SimonHTausch/HiLive -
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IDL2Matlab is an Automatic translation tool from an IDL program into Matlab and Scilab code. We do not guaranty a 100% conversion efficiency.
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MatODE
Matlab interface to the Open Dynamics Engine (ODE)
MatODE is a simple Matlab toolbox for interfacing to the Open Dynamics Engine rigid body physics simulator (ODE, by Russell Smith), created by the Delft Biorobotics Lab (Delft University of Technology, Delft, The Netherlands). The system to be simulated is defined in an XML file, while the joint positions and motor signals can be sensed and actuated from a Matlab script. Examples are provided. Starting at version 0.30, MatODE is only available for Windows and Linux 64-bit. For older... -
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Simox has moved to gitlab. Please update your URLs: https://gitlab.com/Simox/simox A platform-independent robot simulation, motion and grasp planning toolbox consisting of three modules: VirtualRobot to simulate and visualize robots, Saba the sampling-based motion planning library and GraspStudio for grasp planning.
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Virastyar
Virastyar is an spell checker for low-resource languages
Virastyar is a free and open-source (FOSS) spell checker. It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for processing low-resource languages, especially Persian and RTL languages Publications: Kashefi, O., Nasri, M., & Kanani, K. (2010). Towards Automatic Persian Spell Checking. SCICT. Kashefi, O., Sharifi, M., & Minaie, B. (2013). A novel string distance metric for ranking Persian respelling suggestions. Natural Language Engineering,... -
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CMAKE build enviroment for CMSIS MCUs
CMAKE build enviroment for LPC2000 and LPC17xx Cortex MCUs
The goal of project is to build CMSIS like environment for LPC2000 series MCU and to write RTOS for LPC2000 and Cortex Microcontrollers -
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. Dr. Detlef Weigel's Lab in Max-Planck Institute for Developmental Biology. First of all, you have to install the exact version of... -
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STARucn
Monte-Carlo simulation for ultra-cold neutrons
STARucn (Simulation of Transmission, Absorption and Reflection of ultracold neutrons) is a Monte-Carlo software designed to simulate experimental setups and guides for ultra cold neutrons. It relies heavily on CERN's ROOT packages. Developing team : Benoit Clément, LPSC/UJF Damien Roulier, ILL/UJF -
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DuMuX
Porous-Media Simulator
DuMuX, DUNE for multi-{phase, component, scale, physics, ...} flow and transport in porous media, is a free and open-source simulator for flow and transport processes in porous media. It is based on the Distributed and Unified Numerics Environment DUNE, dune-project.org. Its main intention is to provide a sustainable and consistent framework for the implementation and application of model concepts, constitutive relations, discretizations, and solvers. It has been successfully applied to CO2... -
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Flexbar
flexible barcode and adapter removal for sequencing platforms
Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for... -
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FFSM++
French Forest Sector Model
Given the importance of anthropogenic determinants in forest ecosystems within Europe, the objective of the FFSM++ model is to link the evidence arising from biological models with socio-economic determinants, where the expected returns of forest investments represent the main drivers. An (inventory-based) forest dynamic model is hence coupled with a (partial equilibrium) market module and a (micro-based) management one in a national level forest sector model for France (FFSM++). The... -
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Quantum walk library
Toolkit for simulations of quantum walks on graphs
Quantum walk library is set of tools for simulations of quantum walks (for chiral or achiral particles) on graphs based on Zarja library. -
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QSapecNG is a Qt-based symbolic analysis program for linear analog circuits. In fact, it consists of two indipendently parts: the SapecNG framework engine, and the application gui QSapecNG.
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RSS - Radial Stretching System
OpenSource radial stretching system for the scientific community
...Construction plans, source code, and electronic circuit diagrams are freely available under a creative commons license. RSS Website: http://www.somap.jku.at/rss/ -
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ASEP simulation library
Simulation library for SSEP, ASEP or TASEP simulations
ASEP simulation library is specialized for simulations of Asymmetric Simple Exclusion Processes (ASEP) and its mutations like SSEP or TASEP based on a graph. It is consisted of agents, models, timers and graphs that forms united modelling enviroment ready for computer cluster use - all based on Zarja library. -
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ToricCam
Virtual Camera representation using the Toric Space
ToricCam is a C++ library I have developped for my research. It provides a starting point to using the Toric Space viewpoint representation [Lino & Christie, SIGGRAPH 2015]. It also implements our preliminary work published at SCA 2012. The library is released under the GNU General Public License version 3. For researchers who want to use the library for their work, please quote the papers as follows: + Efficient Composition for Virtual Camera Control. C. Lino, M. Christie. In ACM... -
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Automalator
State Dependency deconstructor and mapper for C source code.
Flowcharts not telling you what you want to know about some C source code? Try a State Dependency map! Every C source file is an implemention of a state machine. Implicit in the definition of a state machine is a network of dependencies between the states. The Automalator * deconstructs the C code into the core state machine * collates the transactions into the dependency net * generates a diagram-format file with the states and dependencies as the nodes and edges. ... -
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libznz with zindex
This is a fast version of libznz used in NIfTI C library
This library provides notable speed-up for seeking in large compressed NIfTI files. It is compatible with the libznz interface which is part of NIfTI C library to handle multidimensional (mostly MRI) images. Only the replacement of the currently available libznz library is necessary. To reach the expected speed-up the compressed NIfTI data has to be indexed with the included tool. To compile the binaries, the sources available in this project have to be replaced with the ones in... -
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CUSHAW3 is an open-source parallelized, sensitive and accurate short-read aligner. This aligner proposes a general approach to properly aligning both easy and hard reads to large genomes such as the human genome. Perform evaluation on alignment quality reals that CUSHAW3 consistently outperforms CUSHAW2, BWA-MEM, Bowtie2 and GEM in terms of single-end and paired-end alignment. Furthermore, our aligner has demonstrated better paired-end alignment performance than Novalign3 for short-reads...
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be... -
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DEVSIM
TCAD Device Simulator
TCAD Device Simulator. DEVSIM is a semiconductor device simulation software, using the finite volume method. This software solves partial differential equations on a mesh. The Python interface allows the user to specify their own equations. -
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Libraries for integration of atmospheric trajectories. Includes a basic trajectory integrator, contour advection codes and semi-Lagrangian tracer simulations.
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A library contaning amorphous track based algorithms and auxiliary routines for the prediction of detector response and radiobiological cross-sections in heavy charged particle beams.
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SoftSV
Calling structural variations. The soft way.
SoftSV is a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads. For more information about the algorithm and an evaluation, have a look at this publication: "Robust and exact structural variation detection with paired-end and...
