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DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Calculating 2D-Gray-scale bitmaps Calculation of a 3D-rotation-body form a detected area by using different image processing algorithms. Developed for the German Aerospace Center (DLR). Used Projects: Substance (GUI)
Planning Tool is a tool developed by QualDev Group (Universidad de los Andes, Bogota, Colombia) created to support the planning process and to track project's activities for all the projects worked in the group.
BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
Bringing BOINC and its projects (SETI@Home, etc.) to the Android mobile platform, through translation to Java. ATTENTION: The code is in pre-alpha stage, and currently meant mainly for BOINC developers.
SimpleGrapher is a graphing application for students. It is designed to be as simple as possible to use as well as attractive enough to use in college-level papers/projects for math or science courses.
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a free cross platform calculator for calculating BIG numbers
BigAl is a free open source and platform independent software for calculating really BIG numbers. It supports not only standard arithmetic, but also exact period determination, predefined factorials, fibonacci with seeds, factorization, nth root, etc
Open source oBIX server implementation provides an infrastructure that developers can use for device integration in projects with "systems which sense" (to quote oBIX spec).
This project aims to provide a common building block for projects such as
ADEFU, SEA and VISUAL and other scada projects so that they have a common
interface to the PLC\'s they communicate with.
PLC\'s are Programmable Logic Controllers built to
Traffic Light Controlling Comparator (TLCComp) is a simulator of traffic. It is developed from Green Light District (https://sourceforge.net/projects/stoplicht/). TLCComp provides three new light controllers: Fixed-time, Fuzzy1, FuzzyN
GELLO is an ANSI-accredited HL7 standard for creating computable, unambiguous clinical queries. This project creates an open source compiler and client-server IDE. Projects are stored in a subversion repository, and created by the RCP based client.
JMatrixCalc is a Java package used for matrix calculations. It's aim is to make developing many scientific (and non-scientific as well) project much easier and quicker. These projects include: educational software, statistics and many others.
XCalc is an infix calculator for mobile devices that support J2ME, MIDP 1.0 and CLDC 1.0.Its main features are 2d and 3d plotting of functions and its usability. It uses the Real.java library http://sourceforge.net/projects/real-java.
This project provides a Java API to access ELV's (http://www.elv.de) "Dual USB Stepmotor Interface" (USI2). The communication with the USI2 is based on the FTD2xxj (http://sourceforge.net/projects/ftd2xxj) framework.
VDC has been superseded by DVN: https://sourceforge.net/projects/dvn/ ---- The Virtual Data Center project is building an operational, open-source, digital library to enable the sharing of quantitative research data, and the development of distribute
JXML2OWL Project is divided in two sub projects: JXML2OWL API, a library for mapping XML schemas to OWL Ontologies on the JAVA plaform. JXML2OWL Mapper, an easy to use standalone application with a graphical user interface using the JXML2OWL API.
BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
PileWorks provides the organizational structure for coordinating several different projects which approach some aspect of Pile Technology. PileWorks defines a set of interfaces and implements some basic infrastructure for Pile engines and agents.
The aim of this project is to provide SAT solvers and related products to be easily embedded in Java software. The softwares found here are part of former research projects that are no longer under development but that are made available here because