Showing 14870 open source projects for "linux-debian"

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  • 1
    bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplot. - Note that this is only an NMR spectrum *viewer*, not a full-fledged data evaluation suite
    Downloads: 0 This Week
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  • 2
    hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
    Downloads: 0 This Week
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  • 3
    cdfread is a program for people wirking with mass spectrometry datasets. cdfread implements the routines to read mass spectra and mass chromatograms from data files in netCDF ("Andi-MS") format. Centroid and profile data are supported.
    Downloads: 0 This Week
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  • 4
    MSGraph is a program designed for the interactive, fast, qualitative analysis of mass spectrometric (MS) data. It is a tool to provide fast and simple access to all the information contained in an LC/MS analysis run.
    Downloads: 0 This Week
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  • 5
    Downloads: 0 This Week
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  • 6
    aseryla

    aseryla

    Aseryla code repositories

    This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/
    Downloads: 0 This Week
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  • 7
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  • 8
    openbu

    openbu

    Lightweight L5e vehicle with freely accessible engineering documents

    WE ASSUME NO LIABILITY FOR ANY SAFETY ISSUES OR DESIGN FLAWS! --> STILL IN PROGRESS !!!! This Project includes the engineering documents of a three wheeled sigle seated electric lightweight L5e-A vehicle. The vehicle is designed to be build with "simple" Tools and machines in an individual production or very small batches. All documents in this product are accessible with open source or freeware Software. Used Software: - LibreOffice - Free CAD + FEM Workbench ...
    Downloads: 0 This Week
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  • 9
    KimBlast

    KimBlast

    Blast+ the easy way

    KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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  • 10

    ASGARD

    Metabolic reconstruction from DNA or protein sequences.

    ASGARD is software for metabolic pathway reconstruction, but it can also generate other types of biological sequence annotation (EC and GO numbers, BLAST reports). This program is intended to be run in UNIX-like systems, and supports SGE or PBS.
    Downloads: 1 This Week
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  • 11
     VASPMO

    VASPMO

    Visualization of wavefunctions calculated by VASP (New release: v0.41)

    VASPMO aims at visualizing wavefunctions (or molecular orbitals) from VASP calculations. It reads VASP's output files PROCAR and CONTCAR, and exports an *.out file in Gaussian's output format, which can be visualized by many popular visualization tools, such as JMol, Molekel, Chemcraft, Gabedit and Molden, etc. These tools can further generate *.cube files, which can be visualized by an even wider range of...
    Downloads: 6 This Week
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  • 12
    Visible emission spectra processing utility.
    Downloads: 0 This Week
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  • 13
    Extensible Modeling and Simulation Framework (XMSF) using Web Services
    Downloads: 1 This Week
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  • 14
    MesoRD is a stochastic and deterministic simulator of coupled chemical reactions and diffusions in space.
    Downloads: 0 This Week
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  • 15
    SEGTeX
    LaTeX package for geophysical publications
    Downloads: 0 This Week
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  • 16
    StateS

    StateS

    Draw and Simulate Finite States Machines (FSM)

    Simple tool for drawing Finite State Machines (FSMs). StateS has moved to GitHub and will no longer be updated on SourceForge. New link: https://github.com/ClementFoucher/StateS
    Downloads: 0 This Week
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  • 17
    MarsBaR is a Matlab toolbox for analyzing image data within Regions of Interest (ROIs). Its current home is on Github: see http://marsbar-toolbox.github.io/marsbar
    Downloads: 9 This Week
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  • 18
    SKYSCRAPERSIM (2018 project ABANDONED)
    We do not know the reasons of being abandoned by Ryan in 2018. Fortunately, we have a record which can be traced back to 2017 after figuring out how to obtain in bazaar way COMPLETELY, I translate the revision to git , we might have a chance to ignite again. IF successful, we can do whatever we like. I DO NOT FULLY TRUST AN ENTITY EVEN THAT ENTITY IS OK. SO PLEASE FORK THIS ONE AS SOON AS POSSIBLE ONCE YOU SEE , THE MORE FORKING THE BETTER. IF This helps you, You might consider to...
    Downloads: 31 This Week
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  • 19

    MutaNET

    NGS Pipeline and Automated Mutation Analysis

    MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance.
    Downloads: 0 This Week
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  • 20
    TVscript

    TVscript

    Exploration of the removal of count variable transcripts.

    > See TVscript wiki: https://sourceforge.net/p/tvscript/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: https://sourceforge.net/projects/cview/ 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: (See wiki) 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope: https://sourceforge.net/projects/treescope/
    Downloads: 0 This Week
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  • 21
    U-Net Fusion RFI

    U-Net Fusion RFI

    U-Net for RFI Detection based on @jakeret's implementation

    See original code here: https://github.com/jakeret/tf_unet Currently this project is based on Tensorflow 1.13 code base and there are no plans to transfer to TF version 2. The primary improvements to this code base include a training and evaluation framework, along with a fusion based approach to detection, combining a number of models (currently hard coded to two trained models) along with Sum Threshold as an additional "expert." Additional work is being done to add custom layers to...
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  • 22
    This is software to create web dictionaries, esp. for Esperanto like Reta Vortaro (http://reta-vortaro.de). A dictionary is made from articles written in a special XML dialect by transformations using XSLT, ant and some Java code.
    Downloads: 1 This Week
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  • 23

    GenoCline

    GenoCline is a free Java software for genetic cline analysis

    Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function. Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits. Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted...
    Downloads: 0 This Week
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  • 24
    MVSE

    MVSE

    Estimator of climate-driven, mosquito-borne viral suitability index

    Understanding how climate dictates the timing and potential of mosquito-borne viral transmission is essential for preparedness of public health systems and design of control strategies. We developed the Mosquito-borne Viral Suitability Estimator (MVSE) software package for the R programming environment. The package estimates a suitability index based on a climate-driven mathematical expression for the basic reproductive number (R0). By accounting for local climatic variables, as well as...
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  • 25
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