Showing 3806 open source projects for "java class analysis"

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  • 1

    OrthoRBH

    Rapidly identify orthologous cDNA sequences in related species

    OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs...
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  • 2
    Interdependent Java frameworks: AMath (abstract numbers support); AFuzzy (fuzzy numbers and methods); AMathSys (flexible solvers of linear and nonlinear algebraic and differential equations); ADSM (multi-criteria ranking and grading of alternatives).
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  • 3
    Specview is a Java GUI_based application for 1-D spectral visualization and analysis of astronomical spectrograms generated by a variety of observatories and instruments. Note that we no longer provide file distributions of this software. You are encouraged to visit the specview web site download page: http://www.stsci.edu/institute/software_hardware/specview/download to retrieve an installer appropriate for your platform.
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  • 4

    Fish4Knowledge Project

    Analysis of undersea fish videos

    The Fish4knowledge project investigated: information abstraction and storage methods for analyzing undersea video data (from 10E+15 pixels to 10E+12 units of information), machine and human vocabularies for detecting & describing fish, flexible process architectures to process the data and scientific queries and effective specialised user query interfaces. A combination of computer vision, database storage, workflow and human computer interaction methods were used to achieve this. The...
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  • 5

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
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  • 6

    Systems Glycobiology

    Glycosylation Network Analysis Toolbox (GNAT)

    ...For information about GNAT installation and usage, please see the GettingStarted.pdf file enclosed in the package. To cite GNAT: [1] Gang Liu, Apurv Puri and Sriram Neelamegham, Glycosylation Network Analysis Toolbox (GNAT): a MATLAB based environment for systems glycobiology, Bioinformatics 2013 29: 404-406
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  • 7
    Ergatis is a web-based utility used to create, run, and monitor reusable computational analysis pipelines, utilizing the Workflow engine. It contains pre-built components for common bioinformatics analysis tasks.
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  • 8
    eXows
    Exows extends the capabilities of the OWS (OGC Web Services). It enables the multilingualism functionalities for OWS (INSPIRE compliant) and allows complex features schemas for WFS and WMS getFeatureInfo (GML). It was developed by BRGM in OneGeology and was continued by BRGM in EUROGEOSS.
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  • 9

    FlyDataAnalyzer

    Software Tool for Processing and Analysis of Propagating Channel Measu

    Software Tool for Processing and Analysis of Propagating Channel Measurements. Fly Data Analyzer is the university project (CTU in Prague). It is used in research measurements for input data validation and time synchronization. Test data you can find in download section.
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  • 10
    AsphaltOpen is a project to visualize data collected during road asphalting operations. Asphalt contractors can use the software to visualize their operations, learn from the visualizations, and improve their processes continually.
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  • 11
    E.N.M.L. means Environmental Noise Model Language. The target of the project is the definition of a XML specification model mainly devoted to electronic acoustic data exchange. ENML aims to format ANY kind of noise measurement.
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  • 12
    Easy Equations

    Easy Equations

    Hand Written Equation Creator

    Easy Equations is a utility using which one can write the mathematical equations. The focus of this utility is to provide user friendly access to write mathematical equations which is helpful for students, lecturers, mathematicians and Research persons who prefer using mathematical equations in a document, PowerPoint or web sites. Works on Windows as well as Linux platforms. Software Requirements: JDK 7 or higher. Linux Platform with kernel version 2.7 or higher.(for Linux users).python...
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  • 13
    SADL
    The Semantic Application Design Language (SADL) expresses domain knowledge as semantic models and rules. The SADL-IDE (integrated development environment) is an Eclipse plug-ins for editing SADL, converting to OWL, and testing using Jena or Pellet.
    Downloads: 1 This Week
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  • 14
    Java application for training and deploying text processing applications such as part-of-speech taggers, based on a re-implementation of Brill's algorithm in Java.
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  • 15
    EnvStats

    EnvStats

    An R Package for Environmental Statistics

    EnvStats is an R package for environmental statistics. It is the open-source successor to the commercial module for S-Plus© called "EnvironmentalStats for S-Plus", which was first released in April, 1997. The EnvStats package, along with the R software environment, provides comprehensive and powerful software for environmental data analysis. EnvStats brings the major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package,...
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  • 16

    BioLemmatizer

    Lemmatization tool for morphological analysis of biomedical literature

    The BioLemmatizer is a domain-specific lemmatization tool for the morphological analysis of biomedical literature. It is tailored to the biological domain through integration of several published lexical resources related to molecular biology. It focuses on the inflectional morphology of English, including the plural form of nouns, the conjugations of verbs, and the comparative and superlative form of adjectives and adverbs. README:...
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  • 17

    LQFB-analyser

    A lqfb delegation analyser. A 3d directed weighted multi graph.

    A rich client to analyse data from a liquid-feedback (http://liquidfeedback.org/) instance, for now it's a 3d graph explorer to inspect the delegations. It's an application based on the eclipse platform (indigo). To be precise its a directed weighted multi graph browser in 3d. Find out more in the wiki https://sourceforge.net/p/lqfbanalyser/wiki/Home/ . Generated reports https://sourceforge.net/p/lqfbanalyser/wiki/generated%20lqfb%20reports/ .
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  • 18
    GISBox by Citiviz

    GISBox by Citiviz

    Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...

    GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software...
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  • 19
    guiLiner provides a representation of another program's options and information, enabling one to run a command line program directly from a GUI. In other words, guiLiner creates a GUI for almost any command-line program.
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  • 20
    Gerbil

    Gerbil

    Hyperspectral Image Visualization and Analysis Framework

    The Gerbil project moved to http://www.gerbilvis.org Please visit us there for up-to-date information and current software releases!
    Downloads: 1 This Week
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  • 21
    DAVE is an integrated environment for the reduction, visualization and analysis of inelastic neutron scattering (scientific) data. It is built with IDL from Research Systems, Inc. DAVE is fully supported on Linux, Windows and MacOS X.
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  • 22
    ConoSorter

    ConoSorter

    A Large-scale Cone Snail Transcriptome/Proteome Analysis Program

    ConoSorter is a high-throughput standalone program that implements regular expressions and profile Hidden Markov Models (pHMMs) for large-scale identification and classification of precursor conopeptides into gene superfamilies and classes based on the ER signal, pro-, and mature conopeptide regions generated from raw next-generation transcriptomic or proteomic data. ConoSorter also generates a set of relevant additional information (frequency of protein sequences, length, number of...
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  • 23
    LExAu: Learning Expectations Autonomously. Library for on-line data driven statistical machine learning.
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  • 24

    iAIDA

    iAIDA is a C++ implementation of the AIDA interfaces.

    iAIDA is an implementation in C++ of the AIDA Abstract Interfaces for Data Analysis, a set of interfaces designed for data analysis. Initially designed for use in experimental and theoretical physics, the AIDA interfaces can also be used in other fields.
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  • 25
    Used to record and analyze some behavioural experiments in neuroscience (using usb webcam). it was developed in collaboration with neuropharmacology lab at Faculty of Medicine, Ain Shams University. it can use(JMF,OpenCV,JMyron & AGCamLib) for webcam
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