Search Results for "shell command" - Page 4

Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting...

ForeRunner X01 toolkit provides an easy access to Forerunner 201/301/305/305E GPS-units. There are multiple command line tools to read data from GPS into database and tools to export data in different formats like gpx and tcx.

Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other...

Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module.

This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers.

Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on...

CPU Balance is a Perl script to balance the CPU usage among users. It will allocate CPU resource to each user equally only by the command renice, no matter how many processes/threads a user runs. ################ # Basic Renice Goal ################ 1. User-based balance: every user get the same cpu percentage if they ask for more; 2. all the jobs of one user has the same NI; 3. NI of all jobs tend to move as large as possible when balanced; 4. No sudden change on NI. max...

FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.

osm2postgresql is a Linux script loading openstreetmap data into a postgresql database setting up if needed a server & database (postgis+hstore). Advanced processing is performed, easing rendering. http://wiki.openstreetmap.org/wiki/Osm2postgresql

A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file...

HPC cloud computing for OpenFOAM (R) users

Netkit is a network emulation environment that allows the user to set up complex scenarios on a single PC with little effort and at no cost. In itself, Netkit aims at integrating different other open source products to provide an easy-to-use interface.

xswifs stands for: cross SoftWare Interfaces. This project provide examples (snippets) for interfacing various software tools and languages with various mechanism. It has been created to help in HW/SW co-simulation and to provide benchmarks.

The Regional Urban Growth Model (RUG). RUG Development Team c/o Todd BenDor Department of City and Regional Planning University of North Carolina at Chapel Hill CB #3140, New East Building Chapel Hill, NC 27599-3140 bendor AT unc.edu

SIPeS - Site Identification from Paired-end Sequencing

Affisix is a program for automatic recognition of prefixes. It takes large amount of words and according to the user setting it tries to determine which segments of these words are prefixes.

superseded by SgpDec http://sgpdec.sf.net Java implementation of the holonomy algorithm for the algebraic hierarchical decomposition of finite state automata.

SvnCrawler is a tool for analysis of Subversion (SVN) repositories. The project includes different plug-ins for generating csv reports, rss feeds and more. Creating a new plug-in takes only a few bash lines. More info: http://svncrawler.sourceforge.net

A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.

g03mem takes a Gaussian 03 input file and gives the computational requirements needed for its execution.

Mathematical extensions to unix shell.

A logging shell that can log commands from a shell. Designed to act as an automated lab-book for people that conduct experiments in their standard shell environments. Users can log and re-run experiments with little/no manual effort or interference.

cifget is a DDLm dictionary import expansion utility, which generates expanded dictionaries that could be used when reading, writing, or validating CIF files

The suite of Python-based shell tools for geocoding images from GPS logs (GPX)

This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.