Search Results for "linux packages" - Page 4
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Showing 169 open source projects for "linux packages"
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MolTPC
MolTPC provides a solution for fully automatic tautomer enumeration.
Besides all their conformational degrees of freedom, drug-like molecules and natural products often also undergo tautomeric interconversions. Compared to the huge efforts made in experimental investigation of tautomerism, open and free algorithmic solutions for prototropic tautomer generation are surprisingly rare. The few freely available software packages limit their output to a subset of the possible configurational space by sometimes unwanted prior assumptions and complete neglection of... -
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IMPORTANT! As of version 1.2, cclib development has moved to github. Please use the flowing pages for up-to-date information about cclib: Repository (source code, tracker) - https://github.com/cclib/cclib Online documentation - http://cclib.github.io/ cclib is an open source library, written in Python, for parsing and interpreting the results of computational chemistry packages. It currently parses output files from ADF, Firefly, GAMESS, GAMESS-UK, Gaussian, Jaguar and ORCA.
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Alchemy Linux
A linux distribution for chemists
Alchemy Linux is a Linux distribution (based on Fedora) for chemists (and mathematicians and physicists). This remix comes with a whole set of packages to help with experiments, simulations and publications. (This project is not maintained or endorsed by Red Hat or the Fedora project). -
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NLISP is an extension to Common Lisp that provides an interactive numerical computation environment, similar to packages like Matlab and IDL. NLISP has array syntax, scientific plotting and a numerical library. It currently runs under CMUCL & SBCL Lisp.
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mhGui
A gui for linux users of miniHomer, a GPS tracker
miniHomer is a GPS tracker based on a skyTraq GPS chip. This tools helps you to manage the device if you use Linux as your favourite Operating System. As the tool is written in QT/jquey/HTML/javascript, there is a good change that it will run on other OSes. Version 1.0 should be good enough to be offered to the public Please see the files section for RPM packages -
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ADopenPOWERLINK
openPOWERLINK with Analog Devices ADSP-CM408F Mixed Signal Controller
ADopenPOWERLINK is an open source Ethernet Powerlink Controlled Node (Slave) solution using the Analog Devices ADSP-CM408F mixed signal processor (http://www.analog.com), along with Altera FPGA as network communication processor. The solution is based on openPOWERLINK provided by SYSTEC electronic (http://www.systec-electronic.com), B&R (http://www.br-automation.com) and Kalycito (http://www.kalycito.com). This release contains the necessary and required packages and documentation to... -
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This project will build and maintain packages of OpenFOAM which is compatible with the current version of CentOS/SL/RHEL x86_64. Both the OpenCFD official release of OpenFOAM and the extend version are maintained.
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<... -
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This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
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JSci - A science API for Java
A science API for Java
JSci is a set of open source Java packages. The aim is to encapsulate scientific methods/principles in the most natural way possible. As such they should greatly aid the development of scientific based software. -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic... -
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EnvStats
An R Package for Environmental Statistics
EnvStats is an R package for environmental statistics. It is the open-source successor to the commercial module for S-Plus© called "EnvironmentalStats for S-Plus", which was first released in April, 1997. The EnvStats package, along with the R software environment, provides comprehensive and powerful software for environmental data analysis. EnvStats brings the major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package,... -
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GISBox by Citiviz
Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...
GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software (https://www.virtualbox.org/) on your Linux, Windows or Mac computer. ... -
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Javafastcomplex
Javafastcomplex has both mutable and immutable complex numbers
Javafastcomplex is a fast complex number package for Java. Most existing complex number packages implement only immutable complex numbers, which is easy to understand given that immutable objects lead to more understandable code. Mutable complex numbers would avoid garbage-collection penalty and therefore be faster in calculations. Javafastcomplex implements both mutable and immutable complex numbers, and has a common interface for both, allowing users to write functions that can take either... -
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A collection of Java ports of open source terrain and solar system generation packages. Code has been extensively refactored, extended and documented. GPL License with exception for required libraries.
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latexdiff is a Perl script, which compares two latex files and marks up significant differences between them (i.e. a diff for latex files). Various options are available for visual markup using standard latex packages such as "color.sty".
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GenNon-h
Simulating non-homogeneous multiple sequence alignments
A number of software packages are available to generate DNA MSAs evolved under continuous-time Markov processes on phylogenetic trees. On the other hand, methods of simulating the DNA MSA directly from the transition matrices do not exist. Moreover, existing software restricts to the time-reversible models and it is not optimized to generate nonhomogeneous data (i.e. placing distinct substitution rates at different lineages). GenNon-H is the first package designed to generate multiple... -
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FOR DETAILED INFORMATION GO TO http://cernrootdebs.sourceforge.net Packages of Cern Root software for Ubuntu/64/32bits. This package is going to be installed on /usr/local. Enabled: minuit2 roofit unuran tmva from 5.34.01 Enabled support for asimage, astiff, builtin_afterimage, builtin_lzma, cintex, explicitlink, fftw3, fitsio, gviz, genvector, krb5, ldap, mathmore, memstat, minuit2, mysql, opengl, python, reflex, roofit, shadowpw, shared, ssl, tmva, unuran, x11, xft, xml.
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Seqshell
A JAVA GUI for performing the function of Tophat and Cuffdiff
Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system. By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines. New functions: Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders. An alert email will be sent to your email... -
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This ROS (Robot Operating System) repository contains the ROS packages for using ROS with the Webots mobile robot simulation software.
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Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
The purpose of DressUp is to create an end-to-end RNA seq pipeline in which all of the steps of analyzing data from an Illumina sequencer is done in one step in an HPC environment. RNA seq programs included are TopHat, CuffLinks, CuffDiff, CuffMerge, FastQC, and trimming using the FastX toolkit. DressUp facilitates RNA seq programs by streamlining various packages into a single script. That script executes the RNA seq programs on a batch cluster system. Upon execution of the script, jobs... -
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The USC ROS packages project offers algorithms and drivers for the robotics projects underway in the labs at the University of Southern California. These packages are for use with the ROS software infrastructure (http://ros.sourceforge.net/).