Search Results for "java program" - Page 4
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Showing 311 open source projects for "java program"
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
In consanguineous families, as a result of inheriting the same genomic segments through both parents, the individuals have stretches of their genomes that are homozygous. This situation leads to the prevalence of recessive diseases among the members of these families. Homozygosity mapping is based on this observation and several recessive disease genes have been discovered with the help of this technique in consanguineous families. The researchers typically use SNP arrays to determine the... -
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Luscinia is a program for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis.
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It's a program that plots Bode diagrams with an excellent precision. In this new version it's very easy to provide the function to plot thanks to a simply graphic interface in style "what you see is what you got". A smart output window allows to plot more than one graph at the same time, and easily compare them. The plotted graphs can be exported as images, in various format. Language supported: italian. Next version probably will include other languages; certainly english will be...
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This is the program and data to accompany both the thesis and paper under the name A MINE ALTERNATIVE TO D-OPTIMAL DESIGNS FOR THE LINEAR MODEL This contains the program and summary of the data used for the paper.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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vipR is a program to screen for sequence variants (SNPs, deletions) in sequence data generated by high-throughput-sequencing platforms. Information on this and other projects can be found on: http://www.altmann.eu
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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Matchup
Bioinformatics tool for universal primers and group-specific probes
Matchup program can be used to find universal primers and group-specific probes for DNA-based detection methods llike AFLP(Amplification fragment length polymorphism) or Microarray experiment. -
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Impact is an explicit Finite Element Program Suite which simulates dynamic impact events. It has a range of elements, contact handling and different material laws. Models can be created, solved and analyzed with the included pre- and postprocessor. Impact is based on an Explicit Time stepping algorithm. These kind of codes are used to simulate dynamic phenomena such as car crashes and similar, usually involving large deformations.
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SetFon focus is an interface web based for Praat resources (www.praat.org) wich focus speech sound annalysis; it is a gerent program for acoustic analysis PHP/Mysql based. Developed with the framework SIMP.
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Computing with units
Calculator that takes care of measurement units.
Java program for computations with values expressed in terms of physical or other units. Supports complicated mathematical expressions and user-defined functions. Invoked from scripts, line command, or as GUI. Extensive units data base. -
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Curvilinear and Rectilinear Motions
Simple physics simulation of Curvilinear and Rectilinear Motions
This project has the role of simulating simple Curvilinear and Rectilinear Motions with an easy to use user interface. This program can be used for educational purposes as well as for any other purpose anyone would like. The executable file is a .jar files which means that it can run in any operating system that supports java. Above you can see a screenshot of the program while it is operating. -
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Temperature converter 4 java
A java program to convert temperatures
This program has an educational purpose only. It demonstrates a very simple application to convert temperatures between Celsius, Kelvin and Fahrenheit scales -
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PNP is a program for tutorial purposes in the signal processing area. It allows to set, move and remove poles and zeros of an one dimensional digital filter. The program shows different effects of the filter in the frequency domain.
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Saferwater
Helping to improve drinking water safety where there isn't much.
This program helps the user risk assess the raw water quality, aids in determining optimum clarification and filtration, aids in developing an understanding of the disinfection process, and puts it together in an easy to follow HACCP plan, which identifies the critical barriers, monitoring and limits that should be applied to ensure a reduction in the raw water risk profile. The mitigated or residual risk profile is also given (i.e. assuming HACCP plan implementation) -
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RoboStopwatch
Automation scheduler and monitor with stopwatch GUI widget.
This program schedules, launches and monitors any Java Runnable object. Anything you can do from Java, you can schedule and monitor using this program. It includes a nifty stopwatch widget as a metaphor for measuring performance. The monitoring is done via event messages which are displayed in real time in a GUI dialog and stored in a JavaDB database. -
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DimerRemover
Remove adapter dimers from NGS data
This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment. -
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Dispersion Equation
A program to solve dispersion equation in water waves mechanics
A program to solve dispersion equation in water waves mechanics using iterated and graphical methods. -
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Hilbert II - QEDEQ
proof verifier for mathematical proofs and documentation generator
In the tradition of Hilbert's program we create a formal correct (checkable by a proof verifier) but readable (like an ordinary LaTeX textbook) mathematical knowledge base which is freely accessible within the internet. Logic and set theory started. -
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VOpR
VOpR - a virtual optical rail
...The virtual optical rail as a ray-tracing simulation of the optical system. The goal is to provide fast and useful diagnostic images, not realistic blur. Additionally there is full access to the java source code under the terms of the GPLv3. -
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Unsupervised TXT classifier
Classify any two TXT documents, no training required - JAVA
This program is made to address two most common issues with the known classifying algorithms. First, over-training and second, shortage of data for a training of categories. Instead, each TXT file is a category on its own, rather than an assigned category. In a way, this is similar to clustering but not really a clustering algorithm since there is some training involved. The summarizer from Classifier4J has been adjusted to accept two inputs (lets call them A and B). Then, the summarizer... -
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mojo
mojo provides fast analyzes for your business processes
mojo is a standalone software and library for the fast analysis of business processes. Because of its lightweight architecture and its implementation in Java, it can be used as extension in your program, e.g., business process designer. It provides new researched compiler-based analysis techniques which supports very good failure location. The software can be used under the GNU Lesser General Public License (LPGL): http://www.gnu.org/licenses/lgpl-3.0.txt -
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guiLiner provides a representation of another program's options and information, enabling one to run a command line program directly from a GUI. In other words, guiLiner creates a GUI for almost any command-line program.
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Systems Glycobiology
Glycosylation Network Analysis Toolbox (GNAT)
GNAT is an open source, platform-independent MATLAB based toolbox. It is written in MATLAB and Java. It has been tested in Windows (Windows 7), Linux (Ubuntu), and Mac OS (X Lion) platforms. The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). The second version of this software (GNATv2beta.zip) upgrades the original GNAT program with additional features that are geared towards incorporating glycan-structure experimental data into the simulation environment. ... -
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ORIPA S
A drawer for origami crease pattern
ORIPA S is a drawing tool specifically designed for a origami crease pattern. It is derived from ORIPA which is developed by MITANI Jun. New features by ORIPA S are: - save current crease pattern as a image file (jpeg, png) not only original project file. - while pasting, select a point on pattern to be matched against destination point. - Some considerable bugs are fixed (i.e., wrong undo behavior on ORIPA v0.35). This program is free software: you can redistribute it and/or... -
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
