Showing 343 open source projects for "github-copilot"

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  • 1
    mesa
    As of 2020, this project has moved. See https://mesastar.org. Release versions can be found on Zenodo at https://doi.org/10.5281/zenodo.2602941. The code is now hosted on GitHub at https://github.com/MESAHub/mesa. You can find the documentation at https://docs.mesastar.org/.
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    Downloads: 29 This Week
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  • 2

    COHCAP

    City of Hope CpG Island Analysis Pipeline

    COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download
    Downloads: 1 This Week
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  • 3
    RMGDFT

    RMGDFT

    Real Space Multigrid based electronic structure code.

    News: active RMG development has moved to github https://github.com/RMGDFT News: V4.1.0 released on 09/29/2020 News: V4.0.0 released on 09/01/2020 with major updates. News: V3.0.0 released on 06/09/2018 with major updates. News: V2.2.2 released on 10/14/2017 with minor bug fixes. News: V2.2 with performance enhancements, bug fixes and new features released on 06/26/2017.
    Downloads: 0 This Week
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  • 4
    Jacksum

    Jacksum

    a free cross platform checksum utility, supports 58+ hash algorithms

    Development of this project has been moved to https://github.com/jonelo/jacksum. This site has been left for historical purposes ONLY, you find older Jacksum versions here. Please visit the GitHub site for current development. Jacksum 1.7.0 is a platform independent checksum utility (written entirely in Java) for computing and verifying (integrity check) checksums, CRC and hashes (fingerprints). It supports 58 popular hash algorithms and a lot of unique features.
    Downloads: 9 This Week
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  • 5

    Combinatorial Game Suite

    A computer algebra system for research in combinatorial game theory.

    STARTING WITH VERSION 2.0, CGSUITE HAS MOVED TO GITHUB. The latest version can be found at the CGSuite homepage: https://www.cgsuite.org/ This page is preserved for archival purposes only and is no longer being maintained.
    Downloads: 5 This Week
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  • 6

    Jafama

    A (Strict)FastMath class with 1e-15ish accuracy.

    ...It is a strictfp version of FastMath (and not a fast version of StrictMath): for a same version of this library, its methods always return a same result for same arguments, which might not be the case for FastMath depending on JIT or other JVM optimizations. Requires Java 5 or later. Available on Central since 2015/06/05. Also available on github since 2015/12/13: https://github.com/jeffhain/jafama
    Downloads: 1 This Week
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  • 7

    PHP-Module-Loader

    Simple PHP Module Loader Source Code

    ...The $_GET Variable is now escaped. Now you can try out the new namegenerator module with the PHP-Guestbook or with the PHP-Module-Loader You can get PHP-Modul-Loader @ GitHub: https://github.com/masteraccurate/PHP-Modul-Loader
    Downloads: 0 This Week
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  • 8
    This project is moved to github: https://github.com/sokirko74/aot
    Downloads: 0 This Week
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  • 9
    The latest ESMF development is happening in GitHub: https://github.com/esmf-org/esmf https://earthsystemmodeling.org The Earth System Modeling Framework provides high-performance software infrastructure and superstructure for the construction and coupling of climate, weather, and data assimilation applications.
    Downloads: 0 This Week
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  • 10
    OpenMultiphysics

    OpenMultiphysics

    Application Integration for HPC Multiphysics

    The OpenMultiphysics project is the home for community-driven development of application integration technologies designed to aid in the design and implementation of multiphysics simulation capabilities. Design and development in this project is driven by the Consortium for Open Multiphysics. Feel free to visit us at our GitHub site as well: https://github.com/IllinoisRocstar/IMPACT
    Downloads: 0 This Week
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  • 11
    MetaErg

    MetaErg

    Metagenome Annotation Pipeline

    ...If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub repository: https://github.com/xiaoli-dong/metaerg
    Downloads: 1 This Week
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  • 12

    pyindi-client

    Python binding to the libindi library

    ...Finally there is an equatorial mount 3D simulator written with Freecad and Python, planned to be connected with the PyIndi module. *** The pyindi-client binding has moved to github. ***
    Downloads: 1 This Week
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  • 13
    An open source framework for LC-MS based proteomics and metabolomics. OpenMS offers data structures and algorithms for the processing of mass spectrometry data. The library is written in C++. Our source code and wiki lives on GitHub (https://github.com/OpenMS/OpenMS).
    Downloads: 8 This Week
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  • 14
    This project has moved to GitHub: https://github.com/emmawahl/facepai
    Downloads: 0 This Week
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  • 15

    rRNAFinder

    Fast ribosomal RNA detector and annotator

    ...The input rRNA gene sequences are searched against the downloaded and reformatted SILVA SSU and LSU databases using blastn. Please refer to the README.md file from rRNAFinder GitHub repository located at https://github.com/xiaoli-dong/rRNAFinder for instructions on configuring and running rRNAFinder
    Downloads: 0 This Week
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  • 16
    IQM

    IQM

    Scientific Image and Signal Analysis in Java

    IQM has moved to GitHub
    Downloads: 4 This Week
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  • 17
    JAS-mine

    JAS-mine

    Toolkit for agent-based & dynamic microsimulation modelling

    ...In addition, the platform provides standard tools which are frequently used both in agent-based modelling and dynamic microsimulations, like design of experiments (DOE), run-time monitoring and visualization with plots and graphs (GUI), I/O communication and statistical analysis. JAS-mine source code can be found on GitHub, with the core repository at: https://github.com/jasmineRepo/JAS-mine-core and the GUI repository at: https://github.com/jasmineRepo/JAS-mine-gui
    Downloads: 0 This Week
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  • 18
    panFMP
    panFMP is a generic framework suitable for harvested XML metadata that is searchable through Apache Lucene without any additional RDBMS. Fields can be defined by XPath allowing for full text queries on all types of fields including numerical ranges. The code was moved to Github: https://github.com/pangaea-data-publisher/panfmp
    Downloads: 0 This Week
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  • 19
    MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
    Downloads: 4 This Week
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  • 20
    FastFlow: programming multi-core

    FastFlow: programming multi-core

    Pattern-based multi/many-core parallel programming framework

    ...Thanks to its very efficient CAS-free communication/synchronization support (e.g. few clock cycles core-to-core latency), FastFlow effectively supports the exploitation of fine grain parallelism, e.g. parallel codes managing very high frequency streams on commodity multi-core. FastFlow works on x86, x86_64, PPC, ARM, and Linux, Mac and Win XP/7. From Jan 1, 2018 code development migrated on GitHub at https://github.com/fastflow/fastflow
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    Downloads: 3 This Week
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  • 21
    QualityControlForRadiology

    QualityControlForRadiology

    QC tests and patient doses from radiodiagnostic XRay equipment

    ...This program is found here: https://sourceforge.net/projects/doseinhumanbody/ Read the "README" file for details. Source code and documentation included. Also, available on GitHub: https://github.com/ZiliasTheSaint/RadQC.git Check out for dependent module!
    Downloads: 0 This Week
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  • 22
    PatientKAPRecords

    PatientKAPRecords

    KAP evaluation and patient records in radiodiagnostic

    ...It performs computation of KAP (kerma-area-product if it is not recorded by a dedicated DAP-meter) and record the patient information. The program also generates elegant reports which can be converted as pdf, xls etc. Source code included in jar files. Also, available on GitHub: https://github.com/ZiliasTheSaint/PatientRxRecord.git
    Downloads: 0 This Week
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  • 23
    DoseInHumanBody

    DoseInHumanBody

    Patient dose from medical X-ray and other sources

    ...This package does not contain all data required to run, i.e. does not contain GEANT4 libraries and GEANT4 nuclear data (for saving space). It does contain however the X-Ray spectrum data. Read README.txt me inside Build folder for how to fix it. Source code included. Also, available on GitHub: https://github.com/ZiliasTheSaint/DoseInHumanBody.git
    Downloads: 0 This Week
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  • 24
    RadiationHelper

    RadiationHelper

    Alpha, Beta, Gamma measurements and Nuclide exposure

    RadiationHelper is a data analysis tool for : 1. gross alpha and beta radiation measurement and detector calibration using experimental data (counts acquired by alpha-beta devices). 2. gamma spectroscopy measurements and detector calibration using experimental data (spectra acquired by acquisition software such as Assayer, Gamma Vision, Maestro) 3. gross alpha,beta, gamma detector efficiencies and gamma peak efficiency can be theoretical computed using Monte-Carlo simulation technique for radiation transport (based on EGSnrc toolkit) 4.dose assessment in human body exposed to radiations from nuclides in several common scenarios such as air exposure, water submersion, ground surface, internal ingestion or inhalation. 5. quick dosimetry and shielding computations. It is platform independent (written entirely in Java). Source code included in jar files! Also, available on GitHub: https://github.com/ZiliasTheSaint/RadiationHelper.git Checkout for dependent modules!
    Downloads: 0 This Week
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  • 25
    Jenetics: Java Genetic Algorithm Library
    The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function.
    Downloads: 0 This Week
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