Search Results for "databases" - Page 4

Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It is published by the Kansas State University Laboratory for Knowledge Discovery in Databases (KDD).

The r4st ("Our Forest") project is a set of tools to assist with the rapid development of a database application. It uses shell scripts to drop/add Postgresql database tables/views with data loaded from sql and csv files. This process allows users to apply changes then re-build the system. It is essentially a customizable database regression system. The base schema and data module represent a plant database intended for educational and scientific usage.

MaM is a software tool that processes and manipulates multiple alignments of genomic sequences. MaM computes the exact locations of common repeat elements in multiple aligned sequences, provided by a variety of user identified programs databases and tables. It then graphically displays how the alignment quality varies throughout the aligned sequences, providing separate displays for the repeat and non-repeat portions.

PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.

RMol is an R script with a collection of functions to link information of SD/Molfile structure databases with powerful graph analysis packages in R.

iLastic is an open-source framework to query, integrate and manipulate any type of data in English. Extract, transform and merge information from the web, databases, files or any other data repository using a language you already know... English

metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this.

SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.

representation by relations vs data storage. pile unifies the contradicted qualities of tables/trees (databases) and complex networks, order and flexibility. dynamical data generation on call. fast. natively compressing similarities. search across scopes.

Proper is a propositionalization framework written in Java containing several algorithms for generating propositional (and also multi-instance) data from relational databases. It produces data that can be used by the WEKA machine learning workbench.

A user-space spatial addon for Derby and H2 databases.

WQuery is a domain-specific query language designed to process WordNet-like lexical databases. It may be used as a standalone application or as an API to a lexical database in Java based systems.

Databases to aid Metabolomics projects providing storage functionality for raw and preprocessed data, and integration with existing data analysis environments.

Automated Sequence Annotation Pipeline (ASAP) is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible databases.

Tolk is based on the Spring design pattern to Filter & Translate data from data sources eg.TCP/IP connections, text files, databases and Serial (rs232,usb,BT). Typical applications is to manipulate data and manage devices such as IPICO RFID readers

A tool for autonomous and virtual topical data integration using the focused web-harvesting method.

WSciParser (Web Science Parser) is a handy small library created in C#.NET to parse data from web science databases (ISI Web, NCBI, PubMed...)

Metmask has moved to github http://github.com/hredestig/metmask Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.

Spatio Temporal Toolkit is a pure Java "Conceptual" library released under LGPL License that is used to manipulate spatio temporal data-sets. This library is giving powerful boosts to data warehouse projects that envolves spatio-temporal data handling.

Wikipedia Concept Association Map (WCAM) is new approach for textual knowledge representation and understanding. All concepts and associations are stored in a graph database for better performance and easy distribution.

A software to store, (PUT) meteorological data from complex free form text format to databases and and GET stored (and already loaded) data from databases using OPeNDAP protocol. Written using Java6, XSD, and C++. It support OPeNDAP clients thanks to

ATpy (Astronomical Tables in Python) is a Python module aimed at dealing with tables of astronomical data with a common API. To date, the following formats are supported: FITS, VO, and IPAC tables, and SQLite, MySQL, and PostgreSQL databases

OpenDWS is a hobby project to create a datawarehousing suite that: - Can work on different OS - Federates databases - Can run Data analyses using plugins on different databases This project is programmed in Python Language.

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

AppForMap is a collection of PHP modules for web mapping. The project comprises both clients and server for dealing with simple features, GML, WKT, WMS, WFS, PostGIS databases etc. It can also act as a backend for an OpenLayers frontend.