Showing 408 open source projects for "data mapping"

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  • 1
    Phenalysis

    Phenalysis

    Analyze agronomic plant research plots in aerial orthomosaic images.

    A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on...
    Downloads: 0 This Week
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  • 2
    geoStarsLib  - geodetic library

    geoStarsLib - geodetic library

    Geodesy based library (geodetic and geocentric functions)

    geoStarsLib has functions for dealing with many geodesy-based problems found in positioning, pointing, and surveying situations. It is useful to determine absolute position on the earth, pointing vectors, coordinate transformations, and other functions.
    Downloads: 1 This Week
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  • 3
    ARKit CoreLocation

    ARKit CoreLocation

    Combines the high accuracy of AR with the scale of GPS data

    Uses camera and motion data to map out the local world as you move around. Uses wifi and GPS data to determine your global location, with a low degree of accuracy. Combines the high accuracy of AR with the scale of GPS data. The potential for combining these technologies is huge, with so many potential applications across many different areas.
    Downloads: 0 This Week
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  • 4
    MTKBabel is a Perl program to operate the i-Blue 747 GPS data logger. It should work also with other GPS devices based on the MediaTek MTK chipset. It is free software released under the GPL license.
    Downloads: 5 This Week
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  • 5
    GEOMS2

    GEOMS2

    Geostatistics and geosciences modeling software

    GEOMS2 is a geostatistics and geosciences modeling software. Provides interface for grid (mesh), point, surface and data (non-spatial) objects. It has a 3D viewer and 2D plots using the well known Python engines Mayavi and Matplotlib. It has several functions to manipulate your data as well as provide univariate and multivariate analysis. NOTE: The software is still an early beta. Please tell us if you found a bug. Download datasets for students of Geostatistics 2017 (Petroleum...
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    Downloads: 13 This Week
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  • 6

    PTESFinder

    Post-Transcriptional Exon Shuffling (PTES) Identification Pipeline

    PTESFinder is a computational pipeline for identifying Post-transcriptional Exon Shuffling events from high-throughput RNAseq data. PTESFinder leverages the power of established RNASeq tools and systematically excludes all known classes of false positive structures by applying stringent filters designed to specifically target these false positives. PTESFinder compares alignment qualities of reads mapping to putative PTES structures with qualities of the same reads when mapped to genomic regions and canonically spliced transcripts. ...
    Downloads: 1 This Week
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  • 7
    JAS-mine

    JAS-mine

    Toolkit for agent-based & dynamic microsimulation modelling

    JAS-mine is a Java platform that aims at providing a unique simulation tool for discrete-event simulations, including agent-based and microsimulation models. With the aim to develop large-scale, data-driven models, the main architectural choice of JAS-mine is to use whenever possible standard, open-source tools already available in the software development community. It has built-in utilities for communicating with an underlying relational database. In addition, the platform provides...
    Downloads: 0 This Week
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  • 8
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 1 This Week
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  • 9
    gt-jdbc-korean

    gt-jdbc-korean

    Korean Spatial DBMS Driver

    The Development of Domestic Spatial DBMS Driver supporting java based Open Source GIS(GeoServer, uDig) ● Manual: - https://sourceforge.net/projects/gt-jdbc-korean/files/GeoServer-uDig_KoreanSpatialDBMS_Manual_ko_v.1.0.pdf ● DataStore plugins: - Altibase Plugin( http://www.mangosystem.com:8080/gxt/docs/data/database/altibase.html ) - Tibero Plugin( http://www.mangosystem.com:8080/gxt/docs/data/database/tibero.html ) - Kairos Plugin(...
    Downloads: 3 This Week
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  • 10
    easy-dhpsf

    easy-dhpsf

    GUI for fitting 3D single-molecule images using the double-helix PSF

    This package of MATLAB routines with accompanying GUI allows scientific users to measure the 3D location of single molecules when using the double-helix point spread function (DH-PSF) widefield microscope. Version 2 also includes code that facilitates combining localization data from two spectral channels using a locally-weighted quadratic 3D registration function Features - Double-Gaussian estimator is calibrated via an axial scan of bright immobile fluorescent emitters (e.g. beads) - DH localization is performed through template matching and subsequent double Gaussian fitting - Tiff stacks of SM images are analyzed using template matching followed by double-Gaussian fitting to extract estimates of the molecule positions - Two spectral channels are registered by generating a locally-weighted quadratic mapping function from control point pairs
    Downloads: 1 This Week
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  • 11
    Spatial Viewer for Oracle SQL Developer
    The purpose of GeoRaptor project is to extend Oracle SQL Developer with additional functionality for database administrators or developers working with Oracle Spatial data. Dear Users, A port to version 4.x of SQL Developer is being attempted. It is not simple due to the lack of development resources. Please keep using GeoRaptor with SQL Developer 3.x until the new version is available. Thanks. Simon Greener
    Downloads: 2 This Week
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  • 12
    MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
    Downloads: 0 This Week
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  • 13

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. ...
    Downloads: 0 This Week
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  • 14
    A key goal for NEMO is the development of a formal logic (“ontology”) to support data sharing, logic-based queries and mapping/integration of patterns across data from different labs, different experiment paradigms, and different modalities (EEG/MEG)
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  • 15
    MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
    Downloads: 13 This Week
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  • 16

    libosmscout

    Library for OpenStreetMap offline rendering and routing

    libosmscout offers applications simple, high-level interfaces to offline rendering and routing functionalities based on OpenStreetMap data. It does so by preprocessing *.osm data files and generating binary data and index files for fast access.
    Downloads: 0 This Week
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  • 17
    seqMINER
    A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
    Downloads: 2 This Week
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  • 18
    BEAST

    BEAST

    BEAST is a tool dedicated to assess political goals of woody bioenergy

    The BioEnergy Allocation and Simulation Tool (BEAST) is a tool dedicated to assess political goals of woody bioenergy production in the context of available biomass potentials and corresponding economic and ecological criteria on a regional level. It is a useful tool in participative decision making processes by iterative simulation and visualization of complex issues. BEAST is a data- and model-driven Decision Support System (DSS) evaluating woody biomass potentials from forests, hedges...
    Downloads: 2 This Week
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  • 19
    gvSIG CE (Community Edition)

    gvSIG CE (Community Edition)

    The full-featured, easy-to-use desktop GIS with real processing power!

    The Community Edition (gvSIG CE) is a fork of the gvSIG desktop GIS project (http://www.gvsig.org). It is open to external contributors and fully community-driven. Our official releases are designed to be portable and include all necessary binaries for Linux, Mac OS X and Windows. No installation necessary: Just download, unpack and run!
    Downloads: 0 This Week
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  • 20
    Mapyrus is software to plot Geographic Information System data to PostScript, PDF, SVG and web image files. Mapyrus combines a BASIC-like scripting language, reading GIS datasets and running as either a utility program, a Java Servlet, or as a webser
    Downloads: 0 This Week
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  • 21

    transitfeed

    Tools for reading, validating & writing transit schedule info in GTFS

    transitfeed helps to make public transit information projects more successful for agencies and other interested parties. It provides a library to help you parse, validate, and generate General Transit Feed Spec (GTFS) feed files. It contains several parts, including TransitFeed (Python package for reading, writing, and validating feeds); Feedvalidator (command line tool that checks a GTFS feed for problems); ScheduleViewer (application for exploring a feed on a map) and more; each with their...
    Downloads: 0 This Week
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  • 22

    PPLine

    SNP calling, annotation and gene/transcripts expression quantification

    PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results
    Downloads: 1 This Week
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  • 23
    Ycad is a library of CAD functions in Java. Currently only DXF is supported for reading, viewing and writing. The DXF drawing may be rendered to a Graphics object for printing or imaging.
    Downloads: 0 This Week
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  • 24
    KalypsoBASE
    KalypsoBASE is a Desktop-GIS built on Eclipse. It's focus lies on modelling gis data using GML Application-Schemata. Features contain generic dialogs based on GML, maps based on OGC's SLD, and other tools like a charting framework or API for timeseries
    Downloads: 0 This Week
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  • 25
    MicroCity is a framework for spatial analysis and simulation. It is lightweight, fast, portable, extendable and user friendly. Users can easily operate large GIS and Grid data and perform Spatial, Fractal, Network analysis and simulation.
    Downloads: 0 This Week
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