Search Results for "data integration" - Page 4

The characterization of genomic sites is a major challenge in the understanding and exploitation of next generation sequencing data. Most genomic sites are represented by short, degenerated motifs with a scattered distribution and sometimes with biological function (ex: regulation of gene expression, splicing patterns or epigenetics signals). These motifs are associated with a huge amount of noise and thus, the development of a computational platform for accurate detection of genomic sites requires the integration of various large-scale biological data in order to filter out false positives. ...

syphon is an extension for mod_openopc, to monitor telnet devices (serial devices) that sit on Serial -to- Ethernet bridges (such as barcode scanners) and export parsed data to an OPC compliant device (such as a PLC).

GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein interactions, gene expression, disease-causing probabilities, genomic context). ...

Human Machine integration for vessel segmentation has as main objective finding precise methods for the segmentation of blood vessels in retinal images, with the main goal of improving screening and diagnosis procedures.

...A probabilistic modeling approach is applied by solving the master equation in mitochondrial quality state space in the presence of fusion-fission events, decay of functional quality, mitophagy and mitochondrial biogenesis, as well as molecular damage originating from a random source or from infectious events during fusion and fission. The provided source code is written in C and performs the time integration of the master equation for the time-evolution of the probability to find mitochondria in states of quality q at time t. Output is generated in terms of data files and the graphical visualization of readout parameters is automatically performed using the Graphical Layout Engine (GLE; see: http://glx.sourceforge.net/). Please, send email to thilo.figge<at>hki-jena.de to request a copy of the source code.

metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this.

Databases to aid Metabolomics projects providing storage functionality for raw and preprocessed data, and integration with existing data analysis environments.

ELIA(Eyegaze Language Integration Analysis) supports the analysis of eye-tracking data for studies in language processing. ELIA eases early analysis of data to enable iterative development of experiments in response to spoken language.

A tool for autonomous and virtual topical data integration using the focused web-harvesting method.

This project provides a java implementation of the Captcha project ( see http://www.captcha.net ). A CAPTCHA is a program that can generate and grade tests that: -Most humans can pass. -Current computer programs can't pass.

3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting,DICOM support. Integration environment for VTK, ITK and vtkInria3D under wxWidgets

The TPAC Digital Library is a web-based application that publishes large catalogs of scientific data.

Jitterbit is an open source integration tool that delivers a quick and simple way to design, configure, test, and deploy integration solutions. It supports many document types and protocols: XML, web services, database, LDAP, text, FTP, HTTP(S), file

A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms.

Basic Electronical Medical Management (BEMM) is an application to control medical data of a set of patients. It is built on top of open source technologies, to provide an integration skeleton of mvn, Datanucleus, Spring, Vaadin, Acceleo technologies.

Molecular Graphics and Dynamics. Molecular model builder. Part of the Ascalaph Designer http://sourceforge.net/projects/asc-designer/ project. Windows & Linux.

Spatio Temporal Toolkit is a pure Java "Conceptual" library released under LGPL License that is used to manipulate spatio temporal data-sets. This library is giving powerful boosts to data warehouse projects that envolves spatio-temporal data handling.

Ertha is an open source GIS whose main focus is to guarantee easy extensibility and straightforward integration of custom modules. It provides basic geographic rendering and topologic analysis and exposes the main data structures loaded from shapefiles.

Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.

This jQuery plugin allows you to quickly and easily add mapping to your website. It has been designed from the beginning to handle lots of markers, lots of layers, and custom marker icons. The plugin can also manage sidebars for you.

LogicAnalyzer is a framework as well as an application to operate a PC based logic analyzer. It's built using the Eclipse RCP and designed with extensibiliy in mind. Integrating new devices or creating completely new functionality is easy.

leXkit: a client-server dictionary edition environment, that makes editing easier for the lexicographer, who hasn’t to be aware of technical issues. Entry meta-information is used to provide advanced functionality, such as context-dependent tasks.

EasyGIS simplifies GIS data management, sharing, and publishing. REST interfaces (json, html views). Lucene based FTS searches. Thematic maps, business cartography. Integration with external GIS data providers - Google, OSM.

A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining

The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.