Search Results for ".java" - Page 39
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Showing 4337 open source projects for ".java"
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Stop vibe-debugging.AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
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Java Machine Learning Library is a library of machine learning algorithms and related datasets. Machine learning techniques include: clustering, classification, feature selection, regression, data pre-processing, ensemble learning, voting, ...
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This package contains different tools to add NLP capabilities for Lucene 4.x (it has been tested using Lucene version from 4.6.x to 4.8.1). Although it was originally developed for German, it is, mostly, language independent. It allows the user to lemmatize words to be indexed, to weight termy ba their parts of speech (e.g. weighting nouns mor hevaily than pronouns), and to add synonyms taken from GermaNet or a list you provide to the search index and thereby increase recall of lucene.
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uranus4abm
Universal Random Number Service for Agent-Based Models
The purpose of URaNuS (Universal Random Number Service) is to provide a common library for Agent-based models that allows modelers to define different random streams and/or generators for different model parts in order to investigate the influence of distinct model parts to stochasticity. It is also useful to manage random numbers in the interplay of multiple libraries. -
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BiMS
BiMS (biclustering for mass spectrometry data) is a Java application d
BiMS (biclustering for mass spectrometry data) is a Java application designed to allow the application of biclustering algorithms to mass spectrometry datasets. Users can load their MS datasets and apply different clustering and biclustering algorithms (current version includes Bimax and BiBit). In adition, users can load raw datasets (in mzML or mzXML formats) and preprocess them using MALDIquant package and MassSpecWavelet. -
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BioAnnote
Annotator Desktop application is able to annotate biomedical texts by
Annotator Desktop application is able to annotate biomedical texts by using different high-quality online resources, such as Medlineplus and Freebase. Users can introduce biomedical documents and obtain annotations for the relevant terms, such as diseases, symptoms and treatments. In addition, users can retrieve more detailed information for each recognized entity (making use of an integrated web browser), including related topics, external links, related bibliography and paper abstracts. -
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LGML
LGPL GML parser
...The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC catalogue projects. The library is compiled using Java 1.5 or 1.6. For now, supported inputs are: LineString, MultiLineString, MultiPoint, MultiPolygon, Point, Polygon, MultiSurface (in an experimental way: the only child object handled is Polygon). At the following URL: http://95.110.227.201:8080/lgml is exposed a minimal web interface in order to test it. -
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Network Analyzer
Analyze the network carateristics like Delay, Jitter, Packet loss etc.
...Once the eched packets arrives back to the sender, the analyzer will calculate all the related statistics like, packet loss, jitter throughput etc... NOTE: in order to receive the echo packets you must configure the receiving host to echo the incoming packets. In the next release i will provide another java application that just echo on an UDP port. -
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Mechaglot, Calculate Semantic Similarity
Calculate semantic similarity for any human and human-like languages
...This project models my previous project: https://sourceforge.net/projects/semantics/ Difference is, this project does not use any database and computes any Strings as an input. JAVA was the language of choice, due to availability of modelling tools. This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/. -Powered by WEKA, Classifier4J and SimMetrics. -
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ojmapcoloring
Map Coloring Plugin for OpenJump
This is a map coloring plugin intended for OpenJump. It uses the Five Color Theorem to color an OpenJump layer with five colors such that no two adjacent features have the same color. -
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adLIMS
adLIMS: a Laboratory Information Management System with ADempiere
Many biological laboratories dealing with genomic samples are facing the problem of sample tracking, both for pure laboratory management and efficiency, and for internal policies, such as Good Laboratory Practices (GLP). Our laboratory exploits PCR techniques and next-generation sequencing (NGS) methods, to perform high-throughput integration site monitoring in different clinical trials and scientific projects, based on the delivery of therapeutic genes by viral vectors integrating into the... -
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EV3-JavaBrick
ROS node to control LEGO MINDSTORMS EV3
- Java SE 1.7 compatible - Can be run on both Windows/Linux PC - Can be run on Android devices(Tested on ASUS fonetab7, ASUS zenfone4, Samsung Galaxy S4) - Can be run on reflashed ARM-based AndroidTV sticks (Tested on MK808) - No custom firmware for EV3 brick - Supports about 15 EV3/NXT/HT sensors - Supports EV3 & NXT motors - Supports Android camera -
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OSM2SVG
Openstreetmap Layerd SVG Exporter
This Programm gets the Data from Openstreetmap and converts it to an Layerd SVG File for Inkscape. All conversion is don via a stylesheet. Here is defined what schould be shown and how it is displayed. You can get various styled Maps from the same Data with different sytelsheets. The Stylesheets are Javascript files and easy cusomizeable. (You should have a bit knowledge of OSM tags then it will be easyer to understand) -
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Luscinia is a program for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis.
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picard
A set of tools for working with high-throughput sequencing data
A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team -
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MNCubes
Research project to compute repeating patterns in discrete planes
A 2D line can be rasterized into a 8-connected sequence of pixels which exhibit repeating patterns of connected pixels. Likewise, a 3D plane can be rasterized into connected cubes. A 'rectangular' cut of m x n cubes is a (m,n)-cube. Given m and n, the goal of this project is to generate all the (m,n)-cubes for all the (integer) discrete planes, based on the intersection vertices on a Farey diagram. -
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Geoportal Server is a standards-based, open source product that enables discovery and use of geospatial resources including data and services.
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CLEiM
Cross Lingual Education in Medicine
CLEiM (Cross Lingual Education in Medicine) is an opensource version of an Intelligent System which extract concepts from medical texts and provides qualified information. It integrates information from various sources. This system has been developed by the Intelligent System Group GSI (http://www.esi.uem.es/gsi/) at UEM University. We do NER (Named Entity Recognition) based on GATE platform. The installation is simple, you can use it as a Web application. It has been tested under... -
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The Bio2RDF project aims to transforms silos of life science data into a globally distributed network of linked data for biological knowledge discovery. Bio2RDF creates and provides machine understandable descriptions of biological entities using the RDF/RDFS/OWL Semantic Web languages. Using both syntactic and semantic data integration techniques, Bio2RDF seamlessly integrates diverse biological data and enables powerful new SPARQL-based services across its globally distributed knowledge bases.
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GenoCAD is a CAD software for synthetic biology. This application provides a web-based tool to design plasmids, artificial gene networks, and other synthetic genetic systems composed of standard genetic parts. It includes a parts management system, a rule-based design tool, and a simulation engine. This project has morphed into a SaaS model. The open source code is no longer maintained.
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A project to host code developed for the Microtransat challenge, a race between autonomous sailing robots. This project is intended for both supporting code such as tracking systems and robot control systems or parts of robot control systems.
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javaGeom
A geometry library for Java
A java library for geometry applications. Provides a general framework for manipulating and creating geometric primitives, computing intersection points between shapes, composing them to create new shapes, and performing some measurements. Important note: the repository has now moved to GitHub: https://github.com/dlegland/javaGeom Please update bookmarks! -
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ECMOjo is a simulator and trainer for extracorporeal membrane oxygenation (ECMO). ECMOjo consists of a graphical user interface to allow interaction and train ECMO practitioners.
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Deem
Analyze time-course data with significance tests, clustering, modeling
Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional... -
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It's a program that plots Bode diagrams with an excellent precision. In this new version it's very easy to provide the function to plot thanks to a simply graphic interface in style "what you see is what you got". A smart output window allows to plot more than one graph at the same time, and easily compare them. The plotted graphs can be exported as images, in various format. Language supported: italian. Next version probably will include other languages; certainly english will be...
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CIG-P
CIG-P is a simple yet flexible data visualization tool
CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for...
