Search Results for "java" - Page 35
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Showing 4339 open source projects for "java"
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SCaVis
Scientific Computation and Visualization Environment
SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. ... -
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GeoKettle is a powerful, metadata-driven spatial ETL (Extract, Transform and Load) tool dedicated to the integration of different data sources for building and updating geospatial databases, data warehouses and services.
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MZmine 2
A framework for differential analysis of mass spectrometry data
MZmine 2 is a framework written in Java for differential analysis of mass spectrometry data. -
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MathToWeb is a Java-based authoring tool that converts mathematical expressions written in AMS-Latex to presentation MathML. It can be applied to single equations or entire documents containing many hundreds of equations.
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software... -
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BoardCAD is an easy to use CAD/CAM-program that allows you to quickly design your own surfboards. It is written in Java and can export STEP-files for compatibility with other CAD-systems, and g-code for CNC machines.
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GeneticThesaurus
Annotation of genetic variants in repetitive regions
GeneticThesaurus enables analysis of genetic variation in repetitive regions. See project wiki for details. -
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P-VCD
Content-Based Video Copy Detection
Software for Video Copy Detection. The software has been described in some scientific papers, e.g. http://dx.doi.org/10.1109/ICME.2011.6012212 and http://dx.doi.org/10.1007/s11042-011-0915-x. This software is the result of my PhD at the University of Chile and the participation at TRECVID Content-Based Copy Detection (CCD) evaluation task 2010 and 2011. More details in http://www-nlpir.nist.gov/projects/tv2011/tv2011.html#ccd and in... -
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TE-locate
a tool for calling transposons
TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then. -
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A basic and easy java program to make black and white identikit drawing ,with a library of face elements that you can also modify and expand without limit !Source code available. Also available a very rough base for a 3D construction of the face.
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Kontinuum Calculator
Calculate various aspects of the Kontinuum RPG system.
Kontinuum is a calculator program that enables the user to calculate all probabilistic aspects of the Kontinuum RPG system, especially the dice rules. -
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LexSub
A Lexical Substitution Framework
Lexical substitution framework for supervised all-words lexical substitution using delexicalized features. For a runnable (but GPL-licensed) version of LexSub, see LexSub-GPL (sf.net/p/lexsub/lexsub-gpl) -
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Catania Science Gateway Framework
Framework based on standards to build Science Gateways
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Pipe Network -- Red de Tuberias
Resuelve red de Tuberias // Solve Pipe Networks
Solve pipe networks Resuelve redes de tuberias * Darcy Weisbach * Hazen Williams -
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TimeDoctor is a tool to visualize execution traces of tasks, queues, cache behavior, etc. While originally targeting embedded media processors and includes specific features for analyzing audio/video streaming applications it has wider applicability.
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ACT-CV provides an easy to use interface between visual objects on the computer screen (or another video source) and a cognitive modeling tool.
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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Integrated Hospital Information System. PHP,mySQL,PostgreSQL. Surgery, Nursing,Outpatient,Wards,Labs, Pharmacy, Security,Admission,Schedulers, Repair, Communication & more. Multilanguage, WYSIWYG forms, userconfig, embedded workbots. Modular & scalab
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LiDSiM
LImits of Detection SImulation for Microbes
LiDSiM is a tool to estimate the possible influence of error-tolerant database searches and proteogenomic approaches on the amount of unidentified spectra and the ratios of taxonomic relationship of identified spectra in MS/MS studies of microbial proteomes. For more details about LiDSiM and its functioning, please see "Estimating the Computational Limits of Detection of Microbial Non-Model Organisms" Mathias Kuhring and Bernhard Y.... -
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JSim
Java-based discrete event simulator of an M/M/s queue system
JSim is a Java-based discrete event simulator of an M/M/s queue system. The target audience are students and educators who may use it to explain and understand the basic principles of the system. JSim includes a library of classes that can be used to modify the application to simulate other types of queuing systems as well. Therefore, it may be used as starting point to build larger, application specific simulator. -
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Chemical structure sketching tool, for use with various cheminformatics applications. Convenient to use and moderately sophisticated. Suitable for viewing, creating and editing MDL MOL files.
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Darcy
Software for distance cartogram creation
Darcy is a software for distance cartogram creation based on Waldo Tobler bidimensional regression. -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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TailooApp
TailooApp is a software you can use to control Roomba robot.
TailooApp is a simple software you can use to test the serial communication between your PC and Roomba. The software is a courtesy and it will be improved by you and me. I just developed the first version as a kick start for hobbyists, fathers and their sons, students, curious and all people who bought Tailoo but do not have any programming skill or are in the learning process. -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular...
