Showing 4563 open source projects for "mchange-commons-java"

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  • 1

    SAT-Assembler

    Scalable and accurate targeted gene assembly for large-scale NGS data

    SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.
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  • 2
    GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data.
    Downloads: 1 This Week
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  • 3
    iMSAT
    iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and...
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  • 4
    Petri-LLD is a graphical development environment for real-time automation control and is written in Java. It is based on a form of Petri net, and compiles to a number of programmable logic controller (PLC) languages as well as Java and Visual Basic.
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  • 5
    Multidimensional optimization problems
    NEW OPTIMIZATION TECHNOLOGY & PLANNING EXPERIMENT. Technology is designed for multidimensional optimization practical problems with continuous object functions. Technology higher efficiency than traditional optimization methods.
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  • 6
    RMG - Reaction Mechanism Generator
    Notice: RMG-Java is no longer in active development. Please find the latest version written in Python at http://reactionmechanismgenerator.github.io To see the website o the old Java version of RMG, visit http://rmg.sourceforge.net RMG (Java version) is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).
    Downloads: 4 This Week
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  • 7
    This java program will ultimately solve grid-type logic problems if given enough clues in a pseudo english language. Features a user friendly GUI letting the user know the progression of the solving process based on the clues entered.
    Downloads: 0 This Week
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  • 8
    Lucon

    Lucon

    Lucene based concordancer

    Lucon is a user friendly graphical concordancer. It runs on UTF-8 text and xml files and it allows to search for a sole word, for terms, for words at a certain distance and it displays the contexts of the searched terms.
    Downloads: 0 This Week
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  • 9
    ChannelFinder Directory Service
    Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
    Downloads: 0 This Week
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  • 10
    The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
    Downloads: 9 This Week
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  • 11
    CRAFT HPC Floating-point Analysis

    CRAFT HPC Floating-point Analysis

    CRAFT: Configurable Runtime Analysis for Floating-point Tuning

    CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft
    Downloads: 0 This Week
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  • 12
    Digital PID Controller MSP432

    Digital PID Controller MSP432

    Digital PID Controller Using MSP432

    The code in this repository is old and I don't like the sourceforge interface. You can get the code that was running in the video here: https://github.com/arduinoNube/digital-pid-classroom-demo This was a class demonstration I developed for a mechatronics class. Feel free to contact me about getting design files, code, a little help, etc. It demonstrates proportional, integral, and derivative controllers and their features as well as anti-windup and control loop update rate. It uses...
    Downloads: 1 This Week
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  • 13
    Generic Model Organism Database Project
    GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
    Downloads: 3 This Week
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  • 14
    OpenOrienteering

    OpenOrienteering

    Former project page

    See https://www.openorienteering.org/apps/mapper/
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    Downloads: 22 This Week
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  • 15

    JMapViewer

    Java Swing component for integrating OSM maps into your Java app.

    ...order=name Please, note that no development is performed in this SVN, just contains Maven artifact of official releases (starting from 1.14 version) If you want to give it a try, download code and run the Demo: > mvn compile package > cd target > java -jar JMapViewer-1.14.1-Demo.jar
    Downloads: 2 This Week
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  • 16
    ***** Discontinued (direct part of NetLogo now (since NL v6)!) ***** This extension connects the simulation platform NetLogo with the statistical analysis software R. It adds some new primitives to NetLogo, which offers the interchange of data with R and the call of R functions from NetLogo. See the documentation for more details. There is also the possiblity to open an Interactive R Shell from NetLogo. _______________________________________ Please have also a look on our info...
    Downloads: 0 This Week
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  • 17

    MorphoLim

    MorphoLim : identifying city boundaries

    MorphoLim has been moved to sourcesup (https://sourcesup.renater.fr/morpholim/). MorphoLim is dedicated to the identification of the morphological boundary of urban agglomerations. The method used avoids the need for any pre-defined maximum distance threshold between buildings. It is based on the conceptual and methodological tools of fractal geometry. Authors of the application: Cécile Tannier, Gilles Vuidel, and Pierre Frankhauser (ThéMA, Besançon, France)
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  • 18
    Open XAL

    Open XAL

    Accelerator Physics Framework

    Open XAL is an open source development environment used for creating accelerator physics applications, scripts and services. This project is a collaboration among SNS, CSNS, ESS, GANIL, TRIUMF and FRIB.
    Downloads: 0 This Week
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  • 19
    The Tolven platform and ePHR and eCHR applications enable interoperability across electronic health records for consumers and clinicians. Using Java, EJB3, Faces, Facelets, AJAX, relational database, and LDAP for security.
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  • 20

    came

    Identification of chromatin accessibility from NOMe-seq

    Chromatin accessibility plays a key role in epigenetic regulation of gene activation and silencing. Open chromatin regions allow regulatory elements such as transcription factors and polymerases to bind for gene expression while closed chromatin regions prevent the activity of transcriptional machinery. Recently, nucleosome occupancy and methylome sequencing (NOMe-seq) has been developed for simultaneously profiling of chromatin accessibility and DNA methylation on single molecules. However,...
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  • 21
    Eviewbox is a java imaging suite, its purpose is to view and spread native DICOM medical images and allowing for 2D reconstructions. EViewbox applet will allow to see the DICOM images on every platform.
    Downloads: 1 This Week
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  • 22
    SyMAT

    SyMAT

    Old SyMAT releases

    This is an archive of old releases of SyMAT. The latest version is found at the official website.
    Downloads: 0 This Week
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  • 23

    JUMP Database Query Plugin

    DB Query Plugin for OpenJump

    The JUMP DB Query Plugin is an extension for the OpenJUMP GIS platform that allows OpenJUMP users to give arbitrary database queries to retrieve and display geographic feature sets. Spatial databases currently supported are PostGIS, Oracle Spatial, MySQL, and SpatiaLite.
    Downloads: 0 This Week
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  • 24
    OpenSeaMap
    OpenSeaMap's goal is to add nautical and tourism information a sailor could be interested in to OSM (OpenStreetMap) and to present it in a pleasing way. Those include beacons, buoys and other seamark and port information.
    Downloads: 21 This Week
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  • 25

    Prediction year mortality

    For prediction year mortality of patients with acute heart failure

    Application required own the database AHEAD with patient's personal medical data. It's predicted year mortality of patients.
    Downloads: 0 This Week
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