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Showing 2376 open source projects for "sql command line"
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At the moment its simple command line tool to create nice looking schematic libraries in kicad. I hope that it would be usefull for someone. dont need to click anything just write/paste pin names and thats it.
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LightCAS
LightCAS is very lightweigth Computer Algebra System
LightCAS is lightweight Computer Algebra System. Its size is less that 50K of compiled code. LightCAS can parse, display, evaluate and simplify mathematical expressions. It can also compute derivatives, find solutions of one or second order expressions, solve systems of equations, compute Taylor series. Its code is intended to be full configurable for most applications. -
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IMG2GSLIB
Converts images to GSLIB grids -NEW: 3D support.
IMG2GSLIB is a small command line tool that converts images to grids into GEO-EAS format readable by geoscientific software such as GSLIB, SGeMS, Isatis, Gocad, Petrel, etc. It now can output 3D volumes from image stacking. The ASCII result is sent to stdout, so you can redirect it using the > operator if you want to save it to a file. Run java -jar IMG2GSLIB.jar without arguments to get help on usage. -
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Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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MICA-aligner
Next-generation sequencing short reads aligner based on Intel® MIC
Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s... -
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Large Number Arithmetic
Addition, Subtraction & Multiplication for large integral numbers
This software executes addition, subtraction & multiplication for large integral numbers. You have the option to execute the program using as many numbers as you wish. The numbers can be as large as you wish ... the only restictrion is your computer's RAM space. -
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MetricKnn
Fast Similarity Search using the Metric Space Approach
MetricKnn is an open source library to address the problem of similarity search, i.e., to efficiently locate objects that are close to each other according to some distance function. MetricKnn is comprised of: * Command Line, which is able to perform similarity searches through console commands. Available for Windows and Linux. * C API, which provides the implementation of different indexes, distances and search methods. * C++ API, which is a thin C++ wrapper of the C API. The intended users are software developers, academics, students and data scientist who need to efficiently compare objects according to some criteria. ... -
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gMol
gMol molecular graphics
We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces. -
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The library for utilization of Minimal Quadtree format for storing very large sparse matrices. Please see the paper referenced below for the description of a problem. Corresponding papers: Tree-based Space Efficient Formats for Storing the Structure of Sparse Matrices (I. Šimeček, D. Langr, P. Tvrdík), In Scalable Computing: Practice and Experience, volume 15, 2014. Space Efficient Formats for Structure of Sparse Matrices Based on Tree Structures (I. Šimeček, Daniel Langr, Pavel...
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Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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LipidWrapper
Create lipid-bilayer models of arbitrary geometry.
LATEST VERSION NOW LOCATED AT http://git.durrantlab.com/jdurrant/lipidwrapper As ever larger and more complex biological systems are modeled in silico, approximating physiological lipid bilayers with simple planar models becomes increasingly unrealistic. When building large-scale models of whole subcellular environments, models of lipid membranes with carefully considered, biologically relevant curvature are essential. LipidWrapper, written by Jacob Durrant in the lab of Rommie E. Amaro,... -
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CIMS
Crosslinking induced mutation site analysis
This package includes the scripts to detect statistically reproducible crosslinking induced mutation sites (CIMS) and cross linking induced truncation sites (CITS) from HITS-CLIP data. References: Moore, M.*, Zhang, C.*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011.... -
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MobiSim synthesizer is a software for generating a located synthetic population from aggregated census data. Authors : Gilles Vuidel, Jean-Philippe Antoni
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codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: http://mbe.oxfordjournals.org/content/30/6/1270. codonPhyML is on the cover of MBE! Check this out...
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ADTEx
Aberration detection in tumour exome
Aberration Detection in Tumour Exome (ADTEx) is a tool for copy number variation (CNV) detection for whole-exome data from paired tumour/matched normal samples. -
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify... -
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fastq2vcf
WES analysis pipeline
fasq2vcf is a program that generates an analysis pipeline for Whole Exome Sequencing (WES) projects. It takes the raw reads through to variant calling and annotation. -
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AMOS
AMOS is a collection of tools for genome assembly
AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation. -
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Finds communities in networks with a submodular algorithm based on the optimization of Newman's modularity. The algorithm finds a weakly optimal community partition of the network. Developed by J. R. Busch, M. G. Beiro and J. I. Alvarez-Hamelin,
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fPotencia
Power flow library in C++
fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base circuit. fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. ... -
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Meteosatlib
OpenMTP/HRI/HRIT C++ access libraries.
Meteosatlib has moved to https://github.com/ARPA-SIMC/meteosatlib -
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flow visualization toolbox
matlab 2D image processing GUI toolbox for flow visualization
A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. This work is part of author's PhD study, under Dr S. Zhong @ the University of Manchester's supervision, guidance and support. Both GUI and command line interface are provided for newbie and advanced user. Image can be processed into contour image, matlab mat and tecplot data. This toolbox can be conveniently extended for 2D image processing in other disciplines, for example, surface stress measurement, inferred thermograph, PIV. See developer guide for HOWTO. * example project.mat and calib.mat use abs path will not work for you directly. pl. rebuild yours according to my youtube tutorial -
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.... === Running You should have received this application as an archive file. Uncompress this archive. It contains an executable file named LGRID_Client_XX.jar. This is a "double-clickable" jar file, or you can run it from the command line using: java -jar LGRID_Client_XX.jar NOTE: To Install JCE Unlimited Strength Jurisdiction Policy Files If needed, you should install the Java Cryptography Extension (JCE) Unlimited Strength Jurisdiction Policy Files.
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RINEX3manipulator
A software to manipulate RINEX 3 files
rinex3manipulator is a software to manipulate RINEX 3 files, available functions are: - cut - under sample - filter constellation observations This small program is born to handle in a fast way RINEX 3 files to be used subsequently by the goGPS software: https://sourceforge.net/projects/gogps/ -
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD. -
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TUIT
Taxonomic Unit Identification Tool
For the installation instructions please see Wiki page: https://sourceforge.net/p/tuit/wiki/ IMPORTANT: since version 1.0.4.0 TUIT allows to select RDP-like formatted output to improve out of the box compatability with tools, that assume RDP-formatted input. A new field has been added to the properties.xml, please make sure to update it to contain <OutputFormat format="tuit"/> or <OutputFormat format="rdp"/> in the <BLASTNParameters> section. Read our paper in Biotechniques:...
