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BDD-Based Deductive Database, an implementation of Datalog that uses Binary Decision Diagrams as the underlying data structure. This allows it to represent exponentially-sized relations efficiently.
Java Expert Rule Based Inference Language. Jerbil is an open source rule processing engine written in Java. Currently Jerbil supports a full set of processing functions with text-based and XML interfaces; a Java interface is planned.
JmsCat is a simple message broker that has a limited subset of the JMS api. It provides java applications the ability to send and receive messages asynchronously. JmsCat is non JMS compliant , however it is better than most open source JMS implementation
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The OntoGrid project is producing the necessary technical infrastructure for the rapid prototyping and development of knowledge-intensive distributed open services for the Semantic Grid.
STJUDE-SRM is a laboratory management system designed to support shared resource facility (or core lab) activities. It was designed and developed by the Hartwell Center for Bioinformatics and Biotechnology at St. Jude Children's Research Hospital.
Facelift is a visualization and analysis software for online social networking services. It displays a given community as a node-link diagram and provides several search / filtering functions as well as cluster analysis features.
jCpSim (Java CardioPulmonary Simulations) is a set of Java
packages for simulation of human physiology (respiration,
circulation, ...) and of medical therapy (ventilation, ...).
Creation of user interfaces and therapy optimization is supported.
Hypergherkin is a library for the manipulation of Real valued algebra expressions including equation simplification, symbolic integrals & derivatives. Workings can be rendered using the default presentation MathML generator or a custom alternative
Spectre for mass spectrometry. (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data. (working on mzDATA). Provides filters, alignment- and export tools.
Weatherlib is a Javalibrary providing weather support for your application. It is able to retrieve weather informations from the net and to rearrange them in a object data structure. All of gathered data is reachable through a Java bean-like interface.
The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
Triple-A (Automatic Analysis with Automata) is a full-featured library for (finite) automata written in Java with two powerful analysis tools (dealing with LTL model checking and Presburger arithmetics) and a graphical user interface built around it.
The Distributed Genetic Programming Framework is a scalable Java genetic programming environment. It comes with an optional specialization for evolving assembler-syntax algorithms. The evolution can be performed in parallel in any computer network.
The Word Vector Tool is a simple but flexible Javalibrary to create word vector representations of text documents. Word vectors can be used for various text processing tasks, as text classification, text clustering or information retrieval.
The Simple Interface for Global Optimization Algorithms allows the specification of arbitrary search/optimization problems, solving of these problems, and the specification and implementation of optimization algorithms like evolutionary algorithms.
Dimenso is a library of numeric types for .Net and Java, that obey dimensional analysis and permit calculations with physical quantities. Due to the lack of C++ - like templates with numeric arguments, code generation is employed using Python.
The Evolutionary Environment (EvENet) provides a P2P Network for guiding the evolution of Software Services and Service Compositions over time. This evolution is based on knowledge sharing and optimised using GA and Agent Systems. It is part of the DBE.
SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.