Showing 2376 open source projects for "sql command line"

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  • 1
    GWtool

    GWtool

    Simple tools for working with gravitational waves

    GWtool: simple tools for working with gravitational waves
    Downloads: 5 This Week
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  • 2

    MView

    Extract and reformat a sequence database search or multiple alignment

    NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. ...
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    Downloads: 7 This Week
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  • 3
    OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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    Downloads: 38 This Week
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  • 4

    HYPE

    hydrological model for simulation of water and water quality over time

    Please go to project home (https://hypeweb.smhi.se/model-water/) or wiki-pages (http://hype.smhi.net/wiki/doku.php?id=start) for more information. The hydrological model HYPE is developed at the Swedish Meteorological and Hydrological Institute (SMHI). The model simulates water, nutrients and other substances in small and large river catchments. Included in the project is HYSS, which is needed to run the model. It handles input and output and the simuation over time.
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    Downloads: 26 This Week
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  • 5
    GCBASIC
    GCBASIC is an open-source BASIC compiler for 8 bit Microchip PIC, Atmel AVR legacy, AVRDx and LGT microcontrollers. See https://ko-fi.com/post/The-Story-of-GCBASIC-Making-Microcontroller-Progr-D1D319SJ72 for story of GCBASIC. This is a continuous release project. The latest release is always available. This will give you the most complete development toolchain to create and program 8-bit PIC, AVR and LGT microcontrollers. We have added new capabilities that make GCBASIC the...
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    Downloads: 288 This Week
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  • 6
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    ...It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.
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    Downloads: 47 This Week
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  • 7
    Octave Forge

    Octave Forge

    A collection of packages providing extra functionality for GNU Octave

    ...It provides capabilities for the numerical solution of linear and nonlinear problems, and for performing other numerical experiments. It also provides extensive graphics capabilities for data visualization and manipulation. Octave is normally used through its interactive command line interface, but it can also be used to write non-interactive programs. The Octave language is quite similar to Matlab so that most programs are easily portable. Refer to https://www.octave.org for more information.
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    Downloads: 2,390 This Week
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  • 8
    SWAN
    SWAN is a third-generation wave model, developed at Delft University of Technology, that computes random, short-crested wind-generated waves in coastal regions and inland waters.
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    Downloads: 48 This Week
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  • 9

    calc: C-style arbitrary precision system

    Calc: arbitrary precision C-like arithmetic & calculator

    Calc is arbitrary precision C-like arithmetic system that is a calculator, an algorithm prototyper and mathematical research tool. Calc comes with a rich set of builtin mathematical and programmatic functions.
    Downloads: 7 This Week
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  • 10

    ERmod

    Approximate solvation free energy calculator

    ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation software, such as LAMMPS, GROMACS and/or AMBER.
    Downloads: 7 This Week
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  • 11
    XMedCon

    XMedCon

    medical image conversion utility

    a medical image conversion utility & library; hereby hoping to lower at least one barrier in medical research projects.
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    Downloads: 16 This Week
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  • 12
    In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
    Downloads: 1 This Week
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  • 13
    MESMER is designed to analyze and simulate reactions in the gas phase that take place on a potential energy surface that is characterized by having one or more potential wells, and which are typically described by rate coefficients that depend on pressure (or concentration) as well as temperature. MESMER allows you to simulate systems over a wide range of pressures and temperatures, extract rate coefficients, analyze experimental data, fit model parameters and represent rate coefficients in...
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    Downloads: 8 This Week
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  • 14
    AntTSP

    AntTSP

    Traveling Salesman Problem (TSP) Solver

    Fast Ant Colony Optimization TSP Solver
    Downloads: 0 This Week
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  • 15
    metaf2xml

    metaf2xml

    Parse and decode METAR, TAF, SYNOP, BUOY, AMDAR and write data as XML

    metaf2xml can download, parse and decode aviation routine weather reports (METAR, SPECI, SAO), aerodrome forecasts (TAF), synoptic observations (SYNOP), observations from buoys (BUOY) and meteorological reports from aircrafts (AMDAR). Data can also be taken from decoded BUFR messages. The extracted data can be written as XML or passed to a user-defined function (all done in Perl). It also provides XSLT style sheets to convert the XML to plain language (text, HTML), or XML with different...
    Downloads: 9 This Week
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  • 16
    PSRCHIVE is an application suite and development library for use in the storage and analysis of pulsar astronomical data. It includes an extensive range of algorithms and tools commonly used in a wide variety of experiments.
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    Downloads: 6 This Week
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  • 17
    refbase - Web Reference Database

    refbase - Web Reference Database

    Online bibliographic manager for research groups. Zotero-compatible.

    refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS.
    Downloads: 6 This Week
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  • 18

    Disposition

    Program to generate permutations and combinations

    C Library designed to generate in sequence permutations or combinations (possible orderings or subsets) of objects, with or without repetition. To demonstrate the use of the library, a command-line program (disp) and a GTK graphical version (GDisp) are provided too, useful to teach combinatorics.
    Downloads: 0 This Week
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  • 19
    The continuous medial representation is a method for object representation and shape analysis. Hosted on Sourceforge are the source code for routines that fit medial models to anatomical objects.
    Downloads: 0 This Week
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  • 20

    Nemo

    Individual-based forward-time genetics simulation software

    Nemo is an individual-based, forward-time, genetically explicit, and stochastic simulation software designed for the study of the evolution of life history and quantitative traits, and genetic markers under various types of selection, in a spatially explicit, metapopulation framework.
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    Downloads: 6 This Week
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  • 21
    CRC RevEng

    CRC RevEng

    Arbitrary-precision CRC calculator and algorithm finder

    CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 113 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams'...
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    Downloads: 112 This Week
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  • 22
    Dependency Finder
    Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.
    Downloads: 0 This Week
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  • 23
    BRL-CAD

    BRL-CAD

    Open Source Solid Modeling CAD

    BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools.
    Downloads: 140 This Week
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  • 24

    jif3d

    3D Joint Inversion Framework

    jif3d is a framework for joint inversion of different types of geophysical data in 3D. It currently comprises forward solvers for first arrival traveltimes, scalar and tensor gravity data, magnetics, magnetotellurics, electrical resistivity tomography and surface waves.The framework is flexible in terms of the coupling approach between the different datasets. At the moment cross-gradient coupling, variation of information and deterministic parameter relationships are implemented. Other...
    Downloads: 7 This Week
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  • 25
    C-Munipack
    The C-Munipack is an astrophotometry software package, which offers a complete solution for reduction of images carried out by CCD or DSLR camera, intended on a observation of variable stars, exoplanets and minor Solar System bodies. It provides a simple and intuitive graphical user interface.
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    Downloads: 18 This Week
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