Showing 1300 open source projects for "linux terminal"

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  • 1

    ParDRe

    Parallel tool to remove duplicate DNA reads

    ParDRe is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. It is faster than multithreaded counterparts (end of 2015) for the same...
    Downloads: 1 This Week
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  • 2

    JASI - Java Event-Based Simulation Frame

    JASI - Java Event-Based Simulation Framework

    The JASI library provides an architecture based on a simulation kernel and elementary classes for simulation elements and event to build event-based simulation systems in Java.
    Downloads: 0 This Week
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  • 3

    MPIGeneNet

    Parallel tool to construct gene co-expression networks

    MPIGeneNet is a parallel tool to construct gene co-expression networks using Pearson’s correlation and Random Matrix Theory (RMT). This tool takes as input a matrix with the expression values (a float value) for different genes observed from several samples. It is a parallelization of RMTGenNet tool (https://github.com/spficklin/RMTGeneNet). MPIGeneNet integrates the whole procedure of creating the in one program, which makes the tool easier to work with (the users only have to launch the...
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  • 4
    ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
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  • 5
    p3d

    p3d

    General data-reduction tool for fiber-fed integral-field spectrographs

    p3d is a general data-reduction tool for use with fiber-fed integral-field spectrographs (IFSs); although, the spectrum viewer works with spectrum data cubes of any origin. The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP).
    Downloads: 18 This Week
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  • 6
    PTBC

    PTBC

    irreversible encryption with time self-destruction

    Petoron Time Burn Cipher (PTBC) A promising cipher based on self-destruction of time, complete absence of traces and impossibility of key selection. Key features: AES-CFB encryption with per-file IV Argon2id key derivation with 256MB RAM resistance TTL (time to live) built directly into the encrypted file HMAC-SHA512 integrity verification Self-deleting mode (--autowipe) and one-time access marking (--onetime) No file metadata, no recovery, no password resets Philosophy: If...
    Downloads: 0 This Week
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  • 7
    OxyWitleaf2CSV

    OxyWitleaf2CSV

    Witleaf pulse oxymeter BIN format data decoder.

    The simple program is a Witleaf handheld pulse oxymeter BIN file format data decoder. It reads BIN-files produced by popular professional pulse oxymeters manufactured by Shenzhen Witleaf Medical Electronics Co., Ltd. (like the WIT-S300 shown in the photo on the project icon) and produces a CSV-formatted output with the extracted data to stdout (gets printed to the console if not directed otherwise). More info on https://github.com/mrKirushko/OxyWitleaf2CSV .
    Downloads: 0 This Week
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  • 8
    XBNF library

    XBNF library

    Neurotranslator grammar librairies

    Library providing real-life XBNF grammars. All ressources about XBNF neurotranslator compiler here : https://neurotranslator.sourceforge.io
    Downloads: 0 This Week
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  • 9

    contools

    console tools, batch scripts, shell scripts, shell tools, utilities

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  • 10
    A portable loudspeaker design system supporting measurement, modeling, simulation and optimization of boxes, filters and systems.
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  • 11
    Light console to control a remote system through serial line, telnet... Has non-blocking scroll lock, timestamp, command edit/recall, command fifo, log viewer (unlimited size), search back/forward, occurence count, easy copy/print any part of logfile
    Downloads: 0 This Week
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  • 12
    CleverPsych  Practice Management

    CleverPsych Practice Management

    FREE software to manage your psychology or allied health solo practice

    CleverPsych is FREE software for psychologists and other allied health professionals who run their own practices. We have been using CleverPsych in our own practice in Australia since 2007. The system enables you to record your clients, appointments, services, organisations and referring doctors. The aim is to make operations like generating standard letters, claiming from the government and insurance companies, and reporting income, much easier. Look in the Files tab for...
    Downloads: 46 This Week
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  • 13

    Popppy

    Population Propogation in Python. Simulate births, marriages, deaths

    Full documentation: Download popppyX.Y.html Popppy simulates a population of men and women over a period of time in 1 year time-steps, implementing marriages, births, and deaths. Execution starts with an input consisting of given numbers of men and women of particular ages. It does a decent job predicting 10 to 20 years ahead. Beyond that the input parameters fertility rate, marriage age and mortality rates could change in an unpredictable manner. The tool could also be useful and fun for...
    Downloads: 1 This Week
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  • 14

    42

    Simulation for spacecraft attitude control system analysis and design

    42 is a comprehensive general-purpose simulation of spacecraft attitude and orbit dynamics. Its primary purpose is to support design and validation of attitude control systems, from concept studies through integration and test. 42 accurately models multi-body spacecraft attitude dynamics (with rigid and/or flexible bodies), and both two-body and three-body orbital flight regimes, modelling environments from low Earth orbit to throughout the solar system. 42 simulates multiple spacecraft...
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    Downloads: 2 This Week
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  • 15
    PetoronHash2

    PetoronHash2

    PH2 Permutation-based cryptographic post-quantum hash library with duplex construction (C++20)

    PetoronHash2 (PH2) is a standalone ARX-based sponge construction that combines: A 4096-bit internal permutation core A sponge/duplex architecture with explicit capacity separation An extendable-output function (XOF) Memory-hard (HARD) and burn (BURN) modes A structured tagged absorb scheme A parameterized architecture suitable for hashing, KDF, and stress-oriented derivation PH2 is designed as a wide-state cryptographic primitive with explicit domain separation and configurable output...
    Downloads: 0 This Week
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  • 16

    Visashot

    A python screenshot script for vintage test & measurement instruments

    Visashot lets you capture screenshots from vintage Test & Measurement equipment like oscilloscopes and spectrum analyzers. Visashot uses the VISA abstraction layer and associated libraries to access instruments over HP-IB (GP-IB), serial, ethernet and other supported interfaces. At the moment 120+ instruments are supported. So far most are from HP/Agilent/Keysight with a few extras from LeCroy. More brands models can be supported, please consider contributing!
    Downloads: 0 This Week
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  • 17

    GPS Track Server

    Simple GPS tracking server

    A small server-side application is dedicated to provide TCP-packets response and basic logging functionality from operating low cost commercially available GPS Vehicle Trackers such as Concox GT06N and perhaps others (GT06E and GT06F). The application is using POSIX API and intended to run on Unix, Linux and even Windows systems (cygwin environment). Currently it has been developed and tested on FreeBSD 14.3. Recently added limited support for VL103 series devices from Jimi IoT Co., Ltd..
    Downloads: 0 This Week
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  • 18
    PQS

    PQS

    Petoron Quantum Standard (PQS)

    Petoron Quantum Standard (PQS) v1.2 A fully custom, offline encryption standard - built entirely from scratch. PQS v1.2 is a minimalistic, self-contained encryption engine for secure file protection, with zero reliance on external cryptographic libraries. PBKDF2-HMAC-SHA256 (200k iterations, adjustable) for password hardening. Key separation via BLAKE2s - independent keys for encryption and MAC. BLAKE2s-MAC authentication - 16-byte tag, any modification = instant...
    Downloads: 0 This Week
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  • 19
    RPNCalc

    RPNCalc

    RPNCalc - The command line Reverse Polish Notation (RPN) Calculator

    RPNCalc is the command-line based Reverse Polish Notation (RPN) calculator. RPN calculators make it very simple to do complex calculations, especially if there are parentheses involved. I've created a User Guide (https://frossm.github.io/RPNCalc-UserGuide) to do a better job of explaining how to use RPNCalc than the old readme.md file, which was getting really long. If you have questions, issues, feedback, or ideas, please let me know. You can contact me via the links in the...
    Downloads: 0 This Week
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  • 20

    eval: command line calculator

    Evaluate math expressions from command line or in interactive session.

    Small (156 kB) command line calculator. Evaluate an expression directly from command line with eval <expr> command Example: c:\> eval 2+3 5 or in an interactive session. In a session, results may be assigned to unlimited number of variables and used in later calculations. Example: > x := 6+7 13.0000 >y := x*2 26.0000 Large number of elementary, special, trigonometric, hyperbolic and probability distribution functions are available. Number of decimal digits is defined by...
    Downloads: 0 This Week
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  • 21
    MOSSCO

    MOSSCO

    Modular System for Shelves and Coasts

    The Modular System for Shelves and Coasts (MOSSCO) is a coupling framework for Earth System Models. It helps users to integrate their own numerical models with other developments. Quick Start: git clone git://git.code.sf.net/p/mossco/setups mossco-setups git clone git://git.code.sf.net/p/mossco/code mossco-code cd mossco-code cat QuickStart.md or read online https://sf.net/p/mossco/code/ci/master/tree/QuickStart.md Beware: this is alpha software, expect...
    Downloads: 0 This Week
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  • 22
    PetoronHash-System

    PetoronHash-System

    PHASH | post-quantum XOF hashing algorithm | C++20

    PHASH is a self-contained, dependency-free, post-quantum XOF hashing algorithm implemented in modern C++20. This release delivers the first fully stable production implementation of the PetoronHash-System — a 1600-bit sponge-based hash function with domain separation, extendable output, and deterministic behavior. Key Features No external dependencies — pure C++20 implementation. Extendable Output (XOF) — supports arbitrary output length (256–8192+ bits). Post-quantum oriented design...
    Downloads: 0 This Week
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  • 23

    DEEP

    Differential Evolution Entirely Parallel Method

    The Differential Evolution, introduced in 1995 by Storn and Price, considers the population, that is divided into branches, one per computational node. The Differential Evolution Entirely Parallel method takes into account the individual age, that is defined as the number of iterations the individual survived without changes. The introduced improvements are: (I) allow several oldest individuals to be overwritten by the same number of best ones in the population, (II) new selection rule uses...
    Downloads: 0 This Week
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  • 24
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
    Downloads: 1 This Week
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  • 25
    Thinknowlogy

    Thinknowlogy

    The world's only naturally intelligent knowledge technology

    Natural intelligence is the utilization of naturally occurring logic. This naturally occurring logic provides concrete clues for organizing natural objects, like: - Grouping objects that belong together, - Separating objects that don't belong together, - Archiving objects that have become less important. Natural language and spatial information are sources of natural intelligence: - Natural language is providing concrete logic for organizing knowledge objects, - Spatial...
    Downloads: 0 This Week
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