Search Results for "level set method" - Page 3
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Showing 87 open source projects for "level set method"
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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cmotif
A method for mining conditional phosphorylation motifs
Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif... -
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ActiveGEM contains a set of perl/Tk graphical interfaces for the GEMPAK meteorological diagnostics and plotting package. These research-oriented interfaces provide easy access to low-level GEMPAK functions and allow for the maximum possible flexibility.
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We aim to develop a transformative computational method for automatic discovery of a set of dynamical rules that best captures both state transition and topological transformation in the data of spatio-temporal evolution of a complex network.
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CaspLab - Comet Assay Software Project Lab is a cross-platform image analysis software to measure level of DNA damage in SCGE (Single Cell Gel Electrophoresis) method called also comet assay method.
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qcasoft
Qualitative Comparative Analysis with Fuzzy Data in JAVA
This software allows qualitative comparative analysis with fuzzy data. The program is based on the work of C.C. Ragin. For more information, see the following articles: * Ragin, C. C., 1987, The Comparative Method. Moving beyond qualitative and quantitative strategies, Berkeley/Los Angeles/London: Univ. of California Press. * Ragin, C. C., 2000, Fuzzy-Set Social Science, Chicago/London: University of Chicago Press. * Ragin, C. C., 2000, Redesigning Social Inquiry: Fuzzy Sets and Beyond, Chicago/London: University of Chicago Press. -
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CDSbank
multi-sequence extraction, filtering & formatting
...CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. Defaults ensure ease of use for typical scenarios while allowing great flexibility when needed. Access is via a free web service at http://hazeslab.med.ualberta.ca/CDSbank/. SourceForge code can be used to build a local installation. -
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Fylogenetica
Constructing level-1-networks consistent with a set of quartets
This project is an implementation of an algorithm by J. Keijsper and R. Pendavingh. The goal of the algorithm is to construct a phylogenetic level-1-network that is consistent with a given set of quartets. -
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QVision: Computer Vision Library for Qt
Computer vision and image processing library for Qt.
This library contains among other things a set of graphical widgets for video output, performance evaluation and augmented reality. The library also provides classes for several data types usually required by computer vision and image processing applications such as vectors, matrices, quaternions and images. Thanks to a large number of wrapper functions these objects can be used with highly efficient functionality from third party libraries such as OpenCV, GNU Scientific Library,... -
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Traffic Control Test Set
A standard test set for evaluating traffic control technologies
This project contains a standard set of microsimulation models and test configurations for the evaluation of traffic control systems. It also contains an API to enable the straightforward connection of your traffic control system. Use this standard test set to evaluate your traffic control system because it will enable you to benchmark the performance of your system against many others on a level playing field. -
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AMBIENT
Find active modules in metabolic networks using high-throughput data
...For example, scores for reactions based on transcriptional data of their annotated encoding genes can be used in the network and modules of coordinated expression changes can be found. This provides an alternative to pathway/gene set enrichment analyses which is simultaneously more flexible and more specific. -
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A C++ library for Quadratic Programming which implements the Goldfarb-Idnani active-set dual method. At present it is limited to the solution of strictly convex quadratic programs. The project has moved to GitHub (https://github.com/liuq/QuadProgpp).
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Black Hole Cortex
Sphere surface layers of visual cortex approach maximum info density
...SphereSurfaces outside it recursively have more neurons, more surface area, but less density since it has to eventually dimension-reduce to high level ideas, like there are 10000 Wikipedia page names that cover most parts of the world. We can think of Wikipedia as a layer above our brains, a global SphereSurface of large surface area (a cortex layered on billions of minds) and small (10000 most important pages) density. -
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CRUMp
A probabilistic prediction system of protein phosphorylation sites
CRUMp is based on a kernel-based learning method called Classification Relevance Units Machine (CRUM). Given an input set of protein sequences in FASTA format, the system outputs the position, residue type (S, T, or Y), and the estimated probability of each tested site being phosphorylatable. Latest downloadable files: - crump-0.2.0.tar.gz: CRUMp GNU Octave package - crump-0.2.0.zip: CRUMp MATLAB script - crumptestset.fasta: A testing dataset in FASTA format. -
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HASEM
Matrix c++ library solving any linear algebra problems
HASEM is a c++ template library, it can be easily configure as a expression template. HASEM solves any linear equation of any kind, it might be homogenous/none homogenous, compute the inverse of square/none square matrices, find LU decomposition, find determinant and rank of matrices, calculate the characteristic polynomial of matrices, find the eigenvalues and eigen vectors and so on. HASEM uses many methods, therefore, you are not limited to just one method, you have the choice to define... -
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ETHNOS
ETHNOS - Expert Tribe in a Hybrid Network Operating System
The ETHNOS environment is composed of: 1) ETHNOS-6, a dedicated distributed real-time operating system (developed as an extension to Linux), from which the overall environment takes its name, supporting different high level representation, communication, and execution requirements, 2) a dedicated network protocol designed for both the single robot and the multi-robot environment, specifically designed for noisy wireless communication, 3) an object oriented Application Programming Interface (API) based on the C++ language (and a subset based on Java), 4) a set of additional development tools (a robot simulator, a Java-applet template, etc.). ... -
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Build custom robots in your browser with IncrediBots! Design your robot by drawing shapes, joints, motors, and more! Then, pilot your machine using your own custom key bindings. NOTE: OPEN SOURCE VERSION CAN BE DOWNLOADED FROM "FILES" TAB!
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Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.
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LiverSegm has been developed with the processing of liver images in mind. This software implements a level set based variational approach that incorporates shape priors and appearance models. It uses ITK Snap as interface.
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Its an Eclipse 3.5 Plugin. It can be used to find linear paths for unit testing of any method. The linear path covers all the child methods and till leaf level of the hierarchy. The packages which should be covered in the path can be controlled.
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A set of python programs for forward modelling of marine notch formation, along with an pseduo-inverse model for obtaining relative sea level curves from notch data.
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FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
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Software that implements the tabular method developed by Steve Keen for developing a set of differential equations to model monetary flows in economic analysis, modeling and simulation.
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Phevolo is a fast fractal generator and explorer; it is capable of rendering the Mandelbrot set, Julia and Fatou sets, Newton's method, and others
