Search Results for "java class" - Page 29
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Showing 2604 open source projects for "java class"
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Seqshell
A JAVA GUI for performing the function of Tophat and Cuffdiff
Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system. By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines. New functions: Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders. An alert email will be sent to your email... -
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ResultsDB
Manage your algorithm results.
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JARep is a reporting tool for application performance data, extracted from a performance measuring tool like JAMon API. The data is then stored in a database. Via a webapp or a Swing application you can view the performance over time. See SVN source.
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PoliMaR (Policy Matchmaker and Ranker) is a framework that permits a Semantic Web Service matchmaking and ranking based on Non-Functional Properties (NFPs).
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ParallelSim
ParallelSim is a parallel processor simulator written in java.
ParallelSim is a parallel processor simulator written in Java which shows the effect of increasing the workload keeping the number of processing elements constant in one simulation. The number of processors is scalable and can be increased in subsequent iterations of simulation. The parameters like initial load, load offset, number of processors are declared as constants and can be changed directly in the source code to emulate different scenarios. It is also capable of plotting a graph at... -
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GEPETTO - Gene Prioritization in Java
GEPETTO (GEne Prioritization ExTended TOol)
GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein... -
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openSCADA
openSCADA® is an open source SCADA system written in JAVA
openSCADA is an open source Supervisory Control And Data Acquisition System. It is platform independent and based on a modern system design that provides security and flexibility at the same time. openSCADA is flexible. It is not an out of the box solution, but a set of tools that can be combined in many different ways. It provides development libraries, interface applications, mass configuration tools, front-end and back-end applications. openSCADA is ready to rock. It is used 24/7 in... -
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CapCode is a navigation software for sailors for cruising or regatta. - Reads NMEA 183 data (instruments, GPS, AIS). Implements computation of the VMG , tracing on RNC and ENC (S-57) charts. Display the polar on the chart, future position of the ship. Weather information acquired from grib files are also displayed in the navigation view. developed as an Eclipse RCP in its versions 2.x.x
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Geographic Information System Development Platform build on Netbeans RCP using GeotoolKit.org library.
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jHepWork
jHepWork was a name of the DataMelt program in 2005-20013
jHepWork (2005-2013) was an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with the Jython (Python) scripting language. Currently the project is known under the name DataMelt (https://datamelt.org) -
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BinBase
BinBase is a software for the automatic analysis of Massspec data from
BinBase is a software for the automatic analysis of Massspec data from LECO GC-Tofs. All code and documentation has been moved to the google code site of this project: https://code.google.com/p/binbase/ And support is provided by the company coding and more, which can be reached under: contact@codingandmore.org -
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Conzilla is a concept browser. It browses and edits 'context-maps', a construct similar to conceptual models, UML diagrams or mind-maps. Conzilla uses RDF to describe and distribute such models.
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cnvHiTSeq
cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.
cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input. -
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The MWDB2 project is a combination of cartographic data, associated programs and Java code. Data includes coastlines, islands, lakes rivers, country and state/province boundaries. Data & code can be used on both Intel and non-Intel based computers.
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Java Dynamic Component Framework
This is a lightweight java dynamic component framework
This lightweight dynamic component framework, implemented in Java in a first time uses no code generation at all but uses only contracts. Contracts are expressed using simple software mechanism as interfaces and/or reflection (from middleware to application). A single small jar hosts the code dedicated to data, event and services management over the network, using contracts, reflection and generics. The main goal of the Java Dynamic Component Framework (jdcf) is to simplify the writing... -
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NetBeans Dictionaries
Additional dictionary files for the NetBeans spellchecker.
Additional dictionary files for the NetBeans spellchecker. -
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The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. !!!! Important Announcement !!!! We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired. Please use the Git-Hub...
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The Prajna project is a collection of tools and utility classes combining visualization, geographic displays, data fusion, and semantic reasoning into a cohesive toolkit for enhancing information discovery and reasoning.
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OGEMA allows software applications aiming at energy management and energy efficiency to be executed on an embedded computer (the Gateway) connected to building automation systems. OGEMA wiki https://www.ogema-source.net/wiki/
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FroZenLight connects simple line art and mathematics. The source of light can be positioned so that either symmetric reflection patterns or secret messages (Cryptography) are created. Example light patterns and math exercises for education are provided.
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Tool for testing Web Map Services. It allows to run general random tests of WMS and test based on user-like behaviour.
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FCalculator
La mejor aplicación de su tipo
FCalculator es capaz de realizar cálculos y hacer conversiones de algunas fórmulas matemáticas y físicas. Es portable al estar escrito en Java 100%. Su interfaz gráfica está basada en Swing y es totalmente gratuita. Esta desarrollada con la versión 6 de Java y NetBeans como IDE. -
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TreeGrOSS Forest Growth Simulation
Software for modelling tree growth
Tree Growth Open Source Software is a Java based version of the forest growth simulator for north west Germany BWINPro. -
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VSMOExp
Ontologies, which are made up by standardized and defined controlled
Ontologies, which are made up by standardized and defined controlled vocabulary terms and their inter-relationships, are comprehensive and readily searchable repositories for knowledge in a given domain -
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GriF is a new JAVA Collaborative Grid Framework developed by COMPCHEM Virtual Organization operating in the EGI Production Grid environment aimed at running multi-purpose scientific applications empowering Grid massive calculations.
