Search Results for "linux file parser" - Page 24
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Showing 1604 open source projects for "linux file parser"
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GeoKettle is a powerful, metadata-driven spatial ETL (Extract, Transform and Load) tool dedicated to the integration of different data sources for building and updating geospatial databases, data warehouses and services.
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Alfanous
Quran Search Engine
Alfanous (The Lantern - الفانوس ) is an Arabic search engine API provide the simple and advanced search in the Holy Quran , more features and many interfaces... -
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BIRAP
Bacterial Intergenic Region Analysis Pipeline
BIRAP (Bacterial Intergenic Region Analysis Pipeline) is an open source, easy to use Perl pipeline that can be used to re-annotate bacterial genomes using experimental data. The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. The pipeline requires “pileup” output... -
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at... -
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xmipp
Image processing suite for Electron Microscopy
XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es -
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My Components' DB
MCDB helps you to manage all of your electronic components.
MCDB is an open source, cross platform program which will help you to easily manage your hobbyist electronics lab. You can store, through the program, all of your components in a database file, in this way you can monitor the availability of each component in order to buy new parts before finishing them. You can also store your database files on a cloud service in order to access them from everywhere, you'll just need a PC with MCDB installed. MCDB will be available on the Ubuntu... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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ccwatcher
A computational chemistry monitoring, parsing and plotting application
ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a "Command Line Interface" to which it parses important output and plots SCF energies. -
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MICA-aligner
Next-generation sequencing short reads aligner based on Intel® MIC
Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s... -
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gMol
gMol molecular graphics
We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces. -
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LiDSiM
LImits of Detection SImulation for Microbes
LiDSiM is a tool to estimate the possible influence of error-tolerant database searches and proteogenomic approaches on the amount of unidentified spectra and the ratios of taxonomic relationship of identified spectra in MS/MS studies of microbial proteomes. For more details about LiDSiM and its functioning, please see "Estimating the Computational Limits of Detection of Microbial Non-Model Organisms" Mathias Kuhring and Bernhard Y.... -
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ViennaCLBench
OpenCL linear algebra benchmark GUI for CPUs, GPUs, and MIC
ViennaCLBench provides a graphical user interface for collecting benchmark data for common OpenCL-accelerated linear algebra operations as implemented in the linear algebra library ViennaCL. -
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SOAP3-DP
Fast, Accurate and Sensitive GPU-based Short Read Aligner
Latest Code on GitHub: https://github.com/aquaskyline/SOAP3-dp SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. Compared with widely adopted aligners including BWA, Bowtie2, SeqAlto, CUSHAW2, GEM and GPU-based aligners BarraCUDA and CUSHAW, SOAP3-dp was found to be two to tens of times faster, while maintaining the highest sensitivity and lowest false discovery rate (FDR) on Illumina... -
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TimeDoctor is a tool to visualize execution traces of tasks, queues, cache behavior, etc. While originally targeting embedded media processors and includes specific features for analyzing audio/video streaming applications it has wider applicability.
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OOMMF magnetoelastic extension
Incorporates the magnetoelastic energy in OOMMF simulations.
OOMMF magnetoelastic extension incorporates the magnetoelastic energy to micromagnetic simulations with OOMMF (Object-Oriented Micromagnetic Framework). The extension provides additional Oxs extensible classes, in which you can specify the elastic strain or the displacement along with the magnetoelastic coefficients. Spatially-nonuniform, time-varying strain can be specified either with Tcl scripts or file lists and the effective magnetoelastic field and energy is computed at each simulation step. -
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L-GRID: a Light portal to access Grid via Web. It provides the control over the complete lifecycle of a Grid Job, from its submission and status monitoring, to the output retrieval. It is client-server application. The L-GRID server is hosted on gridui.sns.it. gridui.sns.it is GRID EGI User Interface for public access which supports "dteam","gridit","infngrid","lhcb","ops","theophys" virtual organizations. if your virtual organization is not in this VOs list, please contact us to...
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jMDFLib
This is a small Java library which reads MDF Files up to Version 3.00
This Library for Java shall enable developers to use (at first read, maybe later writer) MDF Files, as described by the Format Specification MDF Format by Vector Informatics. The MDF file format is widely used in automotive engineering and other fields for the recording of measurement data. This Java library parses MDF files and enables different kind of read access. If this library is not helpful for a particular purpose it can at least be used to see how the parsing (and therefore... -
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IMG2GSLIB
Converts images to GSLIB grids -NEW: 3D support.
IMG2GSLIB is a small command line tool that converts images to grids into GEO-EAS format readable by geoscientific software such as GSLIB, SGeMS, Isatis, Gocad, Petrel, etc. It now can output 3D volumes from image stacking. The ASCII result is sent to stdout, so you can redirect it using the > operator if you want to save it to a file. Run java -jar IMG2GSLIB.jar without arguments to get help on usage. Requirements: -Java 1.7 -
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Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
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Meet#Web is flexible module-based web-solution for organizers of all sorts of meetings from local sessions to international conferences/workshops. Available options are paper submission/review, tutorials, hotel reservation form, invoicing, visa appliance form. Main features include web interface for setup/configuration, collaboration, export, statistics, file uploads, e-mail notifications.
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ckon
automatic build tool for ROOT data analysis software
ckon is a C++ program/tool which automatically takes care of compilation, dictionary generation and linking of programs and libraries developed for data analyses within the CERN ROOT analysis framework. This includes parsing include headers to figure out which libraries the main programs need to be linked to. It uses automake/autoconf to be platform independent and GNU install compliant. In addition, m4 macros are automatically downloaded and the according compiler flags included based on a... -
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Lexhoard is a dictionary tool for storing words in different languages with the ability to link entries (or 'translate') from one language to others. This php version is a very simple implementation created over a weekend. It can use either a mysql or a sqlite database (other databases may be used, in theory, as all db access is done with PDO).
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YAFEMS
Yet Another Finite Element Method Solver
YAFEMS (Yet Another Finite Element Method Solver) is a FEM solver for Linux and WIndows that reads a MED mesh file produced by Salome (http://www.salome-platform.org/) with certain groups created into the mesh, and with the help of an input text file (.yaf), performs a 3D or 2D plane stress or plane strain analysis and creates results in plain text format and in MED format. This way a complete analysis can be carried inside Salome, where a mesh file can be created, exported and read by YAFEMS with the help of a .yaf input file and post-processed within Salome using ParaView. ... -
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A project that aims to create reusable components (C++ libraries, COM components, and Edit controls) for Phonetic Transliteration of Indian languages, such as Telugu, Tamil, Kannada etc.
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MapFramer
Create cartographic map frames from an XML template
mapframer is a commandline program that reads a map frame specification from an XML-file and outputs a map frame to a PDF-file.
