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UfakPython is a small subset of Python programming language, for small embedded devices, like PICs. UfakPython sources are translated to C by UfakPython Compiler. Small Device CCompiler can then compile the C outputs to the target device's codes.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Using the CUDA API this project modifies the AutoDock software to run in parallel on NVIDIA GPUs. Users will be able to download and compile the code and use AutoDock on CUDA capable Graphics Cards. Autodock is located at http://autodock.scripps.edu/
C source code of firmware for a hardware hack for "Ninja Pan and Tilt" using "Teensy USB Development Board". It is cross-platform (Win, MAC, Linux) over USB, reports status and can record/playback movements to eeprom. Networked using "telnetninja".
geoCtools manipulates geo-data in csv or kml files. Generates kml files for Google map/earth. Polygons can be: merged, simplified, locations (icons) added with user data in the balloons, selected via FIPS code. Uses libxml2
Code for predicting the 2-dimensional folding with minimum energy of a given RNA sequence.
The code was written and originally released by Rune Lyngso.
A C++ utility library featuring a javascript interpreter, regular expressions, automatic arrays, garbage collection, matrix handling, planar geometry (regions etc) and other useful features. Blends well with STL code.
This project has created a plugin for the Multi Purpose Viewer (MPV) an open source Image Generator (IG) used for testing the Common Image Generator Interface (CIGI). The code of this project is an adaptation of the ShaderManager from Delta3D.
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PROSE is a system that performs controlled, systematic, and efficient modification of the code of running Java applications without requiring them to be shut down. PROSE is an infrastructure that supports software adaptation by extending apps at runtime.
The purpose of the software is to calculate the undulation between the WGS84 ellipsoid (GPS height) and the EGM96 geoid (mean sea level) in MATLAB, based on the Ccode in the "egm96-f477.c" project
Navlib is a collection of algorithms created to solve the navigation problem for 2D non-holonomic vehicles. It includes code for computational geometry, system identification, path planning, and control. Written in C++ with python extensions.
Open Source code for machine learning applied to anthropological/art objects. initially a collaboration between C. Wiggins+I. Tamaru (Columbia) and A. Gansell (Harvard) to identify true regions for lost/misplaced objects recovered in mesopotamia (Iraq).
The Anywhere Location Search allows for location searches using a wide range of inputs (address, city/state, zip code, search string, IP address, landmark name, etc).
This is an opensource project for the calculation of the mathematical constant Pi. If you are a mathematician or programer please contribute ideas or code for this project. Non professionals are also welcome to contribute.
An easy and light carrier phase differential gps code that takes integrated carrier phase measurements from a ground station and a receiver and returns 2-5cm accuracy on relative positioning.
Chasm-interop is a set of tools that parses C++ and Fortran 90 source files and automatically generates bridging code to provide for seamless language interoperability.
libit provides easy to use yet efficient tools for C for signal processing, coding, or scientific code in general. It includes basic vector, matrix and function types, some common source and channel coding tools such as quantization, entropy coding, etc.
Mdxvu is a Ccode program for Linux, Un*x and Win32/Cygwin. It analyses molecular structures and molecular dynamics (MD) trajectories from the AMBER, GROMACS, TINKER and DISCOVER (TM) programs. Simple graphics are provided by using the X11/XLIB library.
CheckFence is a SAT-based formal verification tool that analyzes Ccode implementing concurrent data types on multiprocessors (concurrent queues, sets etc.) with respect to a selected memory model.
This is the code for FIRST robotics team 166's 2008 robotics code. It is written in C, and is intended for use on the 2008 Innovation FIRST robot controller, which utilizes a microchip PIC18F8722 processor to control a FIRST robot.
A topological data structure to handle 2D simplicial meshes (using the Morse operators published by authors). This data structure is implemented using C++ and it is based on the classical Half-Edge. This code started in 2002 and it has been used in many