Showing 1454 open source projects for "assembly source code"

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  • 1

    HYBRYD

    Library written in C with Python API for IPv6 networking

    This project is a rewritten of an initial project that I've called GLUE and created in 2005. I'm trying to readapt it for Python 2.7.3 and GCC 4.6.3 The library has to be build as a simple Python extension using >python setup.py install and allows to create different kind of servers, clients or hybryds (clients-servers) over (TCP/UDP) using the Ipv6 Protocol. The architecture of the code is based on brain architecture. Will put an IPv6 adress active available as soon as...
    Downloads: 0 This Week
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  • 2
    ...In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv and txt format. The software source code is freely available under the license of GPL2.
    Downloads: 0 This Week
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  • 3
    qcv

    qcv

    Computer Vision Framework Library (for Linux)

    QCV is a Qt-based computer vision framework library that provides an easy to use interface to display, analyze and run computer vision algorithms. The library is provided with practical examples to show what you can do with just a few lines of code. OpenCV is used as the supporting computer vision library. QCV provides interfaces for C and C++. The C interface is a set of simple function calls to allow the user to visualize data and obtain events from the system and user input. The...
    Downloads: 2 This Week
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  • 4
    CANUSB Library written in C#
    ...Why not have the DLL as managed code?? Why not simply reference the library in your project and just call its functions?? This project does just that Licence: LGPLV3.: In summary, the only thing we ask is if you improve / bugfix / extend the library then feed these changes back into the project by emailing jon_newcomb or requesting sourceforge access. Applications you develop that use this library are not covered by this licence and can remain closed source and commercial
    Downloads: 0 This Week
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  • 5

    Madeline 2.0 Pedigree Drawing Engine

    Madeline 2.0 Pedigree Drawing Engine (PDE)

    The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. PLEASE NOTE THAT as of 2015.09.30, the most current Madeline source code tree is now maintained on GITHUB at https://github.com/piratical/Madeline_2.0_PDE .
    Downloads: 0 This Week
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  • 6
    IDL2Matlab is an Automatic translation tool from an IDL program into Matlab and Scilab code. We do not guaranty a 100% conversion efficiency.
    Downloads: 0 This Week
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  • 7

    SPA

    SPA: a short peptide assembler for metagenomic data

    ...Craig Venter Institute, San Diego, CA {yyang,czhong,syooseph}@jcvi.org * Corresponding author SPA is available in binary on 64 bit Linux OS. SFA-SPA is available in binary and source for 64 bit Linux OS.
    Downloads: 0 This Week
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  • 8

    rainbow

    short reads clustering and local assembly

    Efficient tool for clustering and assembling short reads, especially for RAD.
    Downloads: 1 This Week
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  • 9

    RSS - Radial Stretching System

    OpenSource radial stretching system for the scientific community

    ...Construction plans, source code, and electronic circuit diagrams are freely available under a creative commons license. RSS Website: http://www.somap.jku.at/rss/
    Downloads: 0 This Week
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  • 10
    Morpheus

    Morpheus

    MORPHEUS is a 3D MPI-OPENMP hydrodynamic simulation code

    Manchester Omni-geometRical Program for Hydrodynamical EUlerian Simulations Copyright © N. Vaytet & T. O'Brien (2008-2014) The University of Manchester Current version 1.33 - 07/2014 MORPHEUS is a 3D MPI-OPENMP Eulerian second-order Godunov hydrodynamic simulation code in cartesian, spherical and cylindrical coordinates which includes radiative cooling and gravity.
    Downloads: 0 This Week
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  • 11

    Automalator

    State Dependency deconstructor and mapper for C source code.

    Flowcharts not telling you what you want to know about some C source code? Try a State Dependency map! Every C source file is an implemention of a state machine. Implicit in the definition of a state machine is a network of dependencies between the states. The Automalator * deconstructs the C code into the core state machine * collates the transactions into the dependency net * generates a diagram-format file with the states and dependencies as the nodes and edges. ...
    Downloads: 0 This Week
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  • 12
    EXMARaLDA
    ...It's a system of concepts, data formats and tools for the computer assisted transcription and annotation of spoken language, and the analysis of spoken language corpora. This project's source code has moved to https://github.com/Exmaralda-Org/exmaralda
    Downloads: 0 This Week
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  • 13
    Qfsm

    Qfsm

    A graphical Finite State Machine (FSM) designer.

    A graphical tool for designing finite state machines and exporting them to Hardware Description Languages, such as VHDL, AHDL, Verilog, or Ragel/SMC files for C, C++, Objective-C, Java, Python, PHP, Perl, Lua code generation.
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    Downloads: 3 This Week
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  • 14

    DiLa Series

    Old PCs' Emulator Series

    DiLa Series is a personal attempt to resurrect the oldest PCs through emulation. Downloads contain source code, documentation and some available binaries. Emulated PCs up to date: Kenbak-1
    Downloads: 0 This Week
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  • 15
    FSMDesigner
    FSMDesigner is a C++ based implementation for a Finite State Machine (FSM) design tool with integrated Hardware Description Language (HDL) generation. FSMDesigner4 uses the Simple-Moore FSM model guaranteeing efficient fast complex control circuits.
    Downloads: 0 This Week
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  • 16

    rarFit

    Maximum Likelihood fitting programme using ROOT and RooFit

    A maximum likelihood fitting package based on ROOT/RooFit for HEP. The fitting is driven by a text file and includes the following main options: 1) fitting, plotting and extraction of PDFs; 2) fitting of maximum likelihood models; 3) creation of projection and sPlot plots; 4) scanning about maximum likelihood minima; 5) combination of maximum likelihood curves with systematic errors for extraction of significance and combined errors; 6) toy studies; 7) means and pulls on fitted...
    Downloads: 0 This Week
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  • 17
    MOEA Framework

    MOEA Framework

    A Free and Open Source Java Framework for Multiobjective Optimization

    The MOEA Framework is a free and open source Java library for developing and experimenting with multiobjective evolutionary algorithms (MOEAs) and other general-purpose multiobjective optimization algorithms. The MOEA Framework supports genetic algorithms, differential evolution, particle swarm optimization, genetic programming, grammatical evolution, and more. A number of algorithms are provided out-of-the-box, including NSGA-II, NSGA-III, ε-MOEA, GDE3 and MOEA/D. In addition, the MOEA...
    Downloads: 40 This Week
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  • 18

    parSRA

    Portable Framework for the Parallel Execution of Short Read Aligners

    ...It uses the following techniques in order to improve scalability: 1) a fast splitting of the input reads using the FUSE kernel module available in most of current Linux distributions; 2) a balanced on-demand distribution of the reads based on the shared locks of UPC++, an extension of C++ for parallel computing that follows the Partitioned Global Address Space (PGAS) paradigm. parSRA is portable as its configuration file allows the users to parallelize the execution of existing SRA tools without the need to modify the source code of parSRA or the aligner.
    Downloads: 0 This Week
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  • 19
    Provides auxiliary tools for the Monte Carlo particle transport code FLUKA (www.fluka.org).
    Downloads: 0 This Week
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  • 20
    OCaml interface to FFTW3 -- the Fastest Fourier Transform in the West! (http://www.fftw.org/). The code is developed at https://github.com/Chris00/fftw-ocaml
    Downloads: 0 This Week
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  • 21

    Ichnaea

    Performance Timing Tools

    Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and...
    Downloads: 0 This Week
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  • 22
    zet-evacuation
    Moved to GitHub. This is the old, unmaintained source code. https://github.com/zet-evacuation A tool to model and simulate evacuation situations in buildings using flows on graphs and cellular automatons. It allows visualization of both models in OpenGL.
    Downloads: 28 This Week
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  • 23

    PyCancerDB

    Cancer Proteomics Database display and management

    PyCancerDB is a source code distribution providing a Web-based interface for browsing and updating the Cancer Proteomics Database, together with scripts for maintaining the database.
    Downloads: 0 This Week
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  • 24

    xorlisp

    Bit level lambda continuations and nothing else - Queue automata

    Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a...
    Downloads: 0 This Week
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  • 25
    rochePlot

    rochePlot

    Schematically plot the evolution of binary stars

    RochePlot is a Fortran code using PGPlot to plot a series of binaries to illustrate the key stages in the evolution of a binary star
    Downloads: 1 This Week
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