Search Results for "command-line kill linux" - Page 20
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Showing 2578 open source projects for "command-line kill linux"
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A Suite of Programs implementing a fast approach to the Debye Function Analysis (DFA) of powder diffraction data from nanocrystalline and/or non-ordered materials. See J. Appl. Cryst. 2015, 48, 2026-2032
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CRP - Chemical Reaction Prediction
Predicting Organic Reactions using Neural Networks.
The intend is to solve the forward-reaction prediction problem, where the reactants are known and the interest is in generating the reaction products using Deep learning. This Graphical User Interface takes simplified molecular-input line-entry system (SMILES) as an input and generates the product SMILE & molecule. Beam search is used in Version 2, to generate top 5 predictions. Maximum input length for the model is 15 (excluding spaces). -
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GILIB
GILIB Large Integer Arithmetic Library
A large integer arithmetic library written in plain C. -
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An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
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octave-intinf
Infinite-precision integer arithmetic for Octave, written in Octave
Octave code to perform arbitrary-precision integer arithmetic. It may or may not work in Matlab. The supported operations are: >> s = a = intinf (126) % Creation of intinf-class object from integer or string >> b = intinf ('-792716404922304611755050042308687') >> c = a + b % Addition >> d = a - b % Subtraction >> e = c * d % Multiplication >> f = (e - a^2) / b %... -
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DetectorCalibration
Peak and global efficiency of radiation source-detector equipment
...Can be used along with RadiationHelper (Beta_Gamma_MC module with Geant4 checkbox selected) but make sure that inside RadiationHelper folder there is MonteCarloPath.txt file having the first line pointing to the path of detector.exe folder (e.g. D:\\DetectorCalibration\\Build) and, if on Linux, next lines pointing to the Geant4 data. RadiationHelper is found here: https://sourceforge.net/projects/radiationhelper/ Source code included. Also, available on GitHub: https://github.com/ZiliasTheSaint/DetectorCalibration.git -
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bspipe
An End-to-End Analysis Pipeline for BS-seq
BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files... -
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A collection of tools that can be used to generate monitors ("watchdogs") from LTL formulae. This is known from the area of runtime verification. For more information, see the associated project homepage.
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Convert C++ software programs into synthesisable Verilog using the Clang compiler frontend to parse and SystemC for intermediates.
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Meraculous-2D
Eukaryotic Genome Assembler
---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid... -
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SIBsim4: an extensive rewrite of the sim4 program to improve execution speed and provide more informative output. Written in C, mainly targeted at Linux and Unix. Keywords: bioinformatics, genome, transcriptome, EST, splicing, exon, intron.
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Tagger is a tool which allows searching fixed-sequence tags (or sequence branches) against entire genomes or mRNA reference sequence databases.
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As of August 2018 Spheral++ has moved to Github -- please see the current repository at https://github.com/jmikeowen/spheral We are leaving a frozen version here on SourceForge for historical reasons. Spheral++ provides a steerable parallel environment for performing coupled hydrodynamical & gravitational numerical simulations. Hydrodynamics and gravity are modelled using particle based methods (SPH and N-Body).
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MOSGWA
genome wide association studies / Bayesian-type information criteria
MOSGWA is a tool for genome wide association studies (GWAS). It currently implements a search strategy using logistic regression and linear regression. -
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PPICompare
detection of rewiring events in protein interaction networks
PPICompare detects statistically significant rewiring events in protein-protein interaction networks - even if they are caused by alternative splicing - and reports plenty of information to that. The input data needs to be constructed with PPIXpress (see https://sourceforge.net/projects/ppixpress/). The original publication can be found on https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-017-0400-x. -
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A scheme (lisp) interpreter written in ARM assembly language (currently: Cortex-M4F,M7, Cortex-A5,A8,A9, Cortex-A53; previously:ARM7TDMI, ARM920T, Cortex-M3) for education, robotics, wearable devices. Tested on Allwinner A64, Amlogic S905, Atmel SAMA5D4, SAME70, SAMV71, NXP LPC4300, RT1050, iMX8M, Samsung S5P6818, ST STM32F4, STM32F7, and TI AM3359, OMAP3530, DM3730, OMAP4430, TM4C1294 chips (previously: NXP LPC-1300,1700,2000, ATMEL AT91SAM7, STM STR711, STR911, STM32, CIRRUS EP9302, LMI...
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Vector network Analyzer (VNA)
Save Touchstone files and load calibration kits from HP & Agilent VNAs
Software for the control of HP, Agilent and Keysight vector network analyzer, such as the 8753, 8720 series using GPIB. Designed for Unix / Linux systems, using a National Instruments GPIB board. There are programs * 'vna' to save Touchstone files. * 'calkit' to upload calibration kit definitions to the VNA, including the properties of the shorts, opens and thrus. This is alpha software, and has little documentation. Contact the author, Dr. David Kirkby at... -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
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GPU MrBayes implements MrBayes MC(3) on the GPU using CUDA. When using our program in your article, please cite our paper "Efficient Implementation of MrBayes on multi-GPU" (http://mbe.oxfordjournals.org/content/early/2013/03/14/molbev.mst043.abstract.html?papetoc).
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CCruncher
Open-Source Project for Credit Risk Modeling
CCruncher is a project for quantifying portfolio credit risk using the copula approach. It is a framework consisting of two elements: a technical document that explains the theory, and a software program that implements it. CCruncher evaluates the portfolio credit risk by sampling the portfolio loss distribution and computing the Expected Loss (EL), Value at Risk (VaR) and Expected Shortfall (ES) statistics. The portfolio losses are obtained simulating the default times of obligors and... -
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SCRAM
Probabilistic Risk Assessment Tool
SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses. -
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mdoptcli
Multidimensional Optimizer for Command Line
This program is a command-line interface to several multi-dimensional optimization algorithms coded in the *GNU Scientific Library -- GSL*. Namely the *Simplex* algorithm, which does not need a gradient, and from the gradient-based algorithms the *Conjugate Gradient -- CG* and the *Broyden-Fletcher-Goldfarb-Shanno -- BFGS* methods. The energy (and possibly energy gradient) is evaluated by a given command, which has to accept coordinates on standard input and returns the... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. -
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TEACUP
TCP Experiment Automation Controlled Using Python
TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP...
