Search Results for "regular expression tool" - Page 2

This project contains a set of php/perl scripts to analyze Cisco IOS-XR routers PE configuration, providing an html output which is very useful to surf over configurations. Moreover, it contains some other functions to search and compare configurations (access-list, prefix-sets, route-maps ...) between XR and IOS routers, and to analyze syslog data. It is not intended for "normal" end-users, but for network administrators and operations groups. You will need to install Apache (or any...

Tautomaton is a C++11 -template library for deterministic (DFA) and non-deterministic finite automata (NFA). It supports regular expressions and efficient input matching of multiple regexps simultaneously. The library comes with a somewhat grep-like command-line tool for showcasing these features.

...MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the open source program SOAP (Short Oligo Alignment Program), and mCNNR sites recognition is performed by regular expression in perl.

GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods.

RNAseqR is designed for expression analysis of RNA-seq data, and is best suited for analysis of multiple, unreplicated libraries. It is a C++ coded program currently compiled for Linux systems. With GUI and command line interfaces, it can do log, PPM, and/or RPKM (if lengths provided) transformations, as well as, statistical analysis for differential expression, using the negative binomial cumulative distribution function (CDF) or the R test statistic introduced for EST analysis by...

The Katsura tool overlays microarray gene expression data, proteomics, and similar biological data onto metabolic pathways. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)]

FpgaC compiles a subset of the C language to net lists which can be imported into an FPGA vendors tool chains. C provides an excellent alternative to VHDL/Verilog for algorithmic expression of FPGA reconfigurable computing tasks. More info in wiki.

A tool for visualizing regular polytopes in stereographic projection. Capabilities include: a large database of Coxeter polytopes, 6-axis motion control, animation, fly-though, stereo viewing, high-res capture, depth-blur, and many style options.

Geographic tag manipulator - a simple XSLT-based tool to add, remove, or change tags of OpenStreetMap objects.

Forensic tool designed to extract 3GP video files (regular files, deleted or fragments), SMS (regular, erased or fragments) and address books (regular, erased or fragments) from memory dumps of motorola V3i, V3r and V3D&G cell phones.

A collection of python scripts to create and handle an XML corpus (a large collection of text for linguistic purpose) from an original Wikipedia database backup dump. It includes a regular expression based parser for the MediaWiki markup language.

Genome Expression Pathway Analysis Tool - Analysis and Visualization of Microarray Gene Expression Data under Genomic, Proteomic and Metabolic Context

dna2abc turns DNA sequences into musical sequences. The key feature is the rule editor; a rule is a regular expression paired with a Tcl script. dna2abc scans a DNA sequence, testing each regular expression: if it matches, the Tcl script is run.

Cellogica is a cellular logic analysis tool. It incorporates sequential logic and finite state machine to elucidate the relationship between transcription factors and corresponding gene expression.

Cluster Search, a program for genome-wide regular expression pattern matching.

The Perl Formal Language Toolkit (FLaT), is a set of compatible Perl modules used for investigating regular expressions and finite automata. It is also a goal to create a tool kit, which may be used to create apps with FAs as underlying data structures..

Searches arbitrary text input (logs, etc) for regular expression(s) matching, and then executes arbitrary SQL statement(s) with matched substrings used as parameters. Offers daemon, incremental and transactional features.

Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.

Jaguar is a GPL tool written in Java (tm), provides an infrastructure of libraries, engines and graphical applications that support most of the models and algorithms reviewed in a regular undergraduate computer theory (automata & formal lang) course.

This program allows you to specify a Deterministic Finite Automata, Nondeterministic Finite Automata, or Generalized NFA and will return a regular expression which recognizes the same language as the FA you described.

Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.

JFD is an educational Java tool for computing the formal derivative of an expression. It recognizes the regular operators, parentheses and functions. It can also be extended with custom functions and/or operators.

SymDiff is a little command line tool for symbolic differentiation and expression evaluation. Furthermore, the code can be used for the symbolical implementation of certain mathematical algorithms that require derivatives.

JREC is a framework for building finite state automatons from regular expressions based on a general grammar.