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Showing 62 open source projects for "less"
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runjags
The 'runjags' R package and standalone JAGS extension module
This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A JAGS extension module provides additional distributions including the Pareto family of distributions, the DuMouchel prior and the half-Cauchy prior. -
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time. -
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ConvertMAS
ConvertMAS converts Chemical File Formats mol, mol2 and sdf.
...Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available for conversion of Chemical file formats; but ConvertMAS mainly works on mol, mol2 and sdf effectively. -
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FASTQSim
NGS data characterization and in silico read generation
...In this regard, in silico datasets generated with the FASTQsim tool hold several advantages over natural datasets: they are sequencing platform independent, extremely well characterized, and less expensive to generate. -
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LightCAS
LightCAS is very lightweigth Computer Algebra System
LightCAS is lightweight Computer Algebra System. Its size is less that 50K of compiled code. LightCAS can parse, display, evaluate and simplify mathematical expressions. It can also compute derivatives, find solutions of one or second order expressions, solve systems of equations, compute Taylor series. Its code is intended to be full configurable for most applications. -
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD. -
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ALTER is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.
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Ezys
Ezys 3D medical image registration program
...Ezys fully exploits the parallel computing power of inexpensive commercial graphics processing units (GPU), resulting in a very fast and accurate program capable of running on desktop PCs and even some laptops. On these systems, non-linear image registrations take less than a minute to complete. Ezys implements a diffeomorphic inverse consistent image registration algorithm with a demons-style regularization based on a non-parametric free form deformation model. Mutual Information and Normalized Mutual Information cost functions make Ezys a perfect tool for an inter-modal image registration. -
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Redhat Linux Oracle OVM Systems Monitor
Redhat Linux OVM System Performance Monitoring
It's a very light Redhat Linux and Oracle OVM System Performance Monitoring tool written in Perl using rrdtool for Database and Graphing. Allows you to query the RRD database given a set of dates and generates a web based graphs. Easy to install. Uses less disk space than most performance monitoring tool. Data of each host monitored is kept for 2 years and occupy less that 25 MB of disk space. -
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minydro
A simple hydrodynamic code less than 700 lines long!
A short and simple hydrodynamic Godunov code using a cell-based structure. This program is free to use. It was designed mainly for teaching purposes and it is made freely available in the hope that someone may find it useful. -
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allink
Software for data analysis, image processing, simulations, solver.
...Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. DrImage) image manipulation on the Matematica filters. The program is intended to use as less as possible external libs (optional: openGL, gsl, fftw, cgal, png, tiff, boost, MPI, Qt...). -
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IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
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Web site to translate text from Spanish to a regular Spanish called "espanes". This lenguage adaptation is very useful for learning Spanish because ia a simplified version with less verbal modes, accents enhanced, prefix, infix and suffix reduced....
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TronTool
Tuning of java neuroph.org neural nets.
By using a neural net from neuroph.org with the programmlanguage Java, you can change the net by this software. Easy watch it on the screen and move the values up or down. More or less value at the output neurons. Saving, Loading from different .nnet`s. Adding comments. Changing the visible output neuron Setting wished input neurons to get visible. A small fast and easy weight version and a continuing version, which should get involved in the neuroph project. -
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NoCTweak
a Parameterizable Simulator for Early Exploration of Networks On-Chip
A networks-on-chip (NoC) simulator allows designers to early estimate performance (latency and throughput), energy efficiency (average/peak power, average energy per packet) and area of several networks on-chip configurations at different CMOS nodes. This tool is a cycle-accurate simulator and is open-source using SystemC, a C++ plugin, which is used to quickly model complex systems at a higher level but less details than RTL. NoCTweak was developed by Dr. Anh Tran and Dr. Bevan Baas at UC Davis. NoCTweak has been extended and integrated into McSim, a project developed by Dr. Abdoulaye Gamatié, Dr. Gilles Sassatelli, Dr. Manuel Selva et al. at LIRMM lab. McSim is a simulator for NoC-based many-core platforms, and is a part of the DreamCloud European project. ... -
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HLAgile
Tools for distributed simulation
This project is devoted to producing tools to help HLA developers write software that is less tied to vendor specific libraries and/or particular FOMs. -
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wxChaos
An open source fractal generator extensible with scripts.
wxChaos aims to be relatively simple and yet providing the user with many predefined fractals and algorithms to create beautiful results in less time. It also allows the user to create new fractals with user formulas and user scripts. -
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LuaCV
OpenCV library wrapper for Lua language
LuaCV is OpenCV library wrapper for Lua language. Main goal is to access fast image processing library to light-weight, non-type language. Thanks to CMake project is a much easier to compile it under many OS platforms which are supported by OpenCV. LuaCV is being developed at faculty of Electrical Engineering and Communication of Brno University of Technology in Czech republic. Working with: Lua 5.2, OpenCV 2.2-2.4 LuaCV-0.2.0 (svn rev. 62) is last version compatible with Lua 5.1... -
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EGNLA
Heterogeneous cluster for acceleration of linear algebra computations
...We design this grid with respect to maximal ratio between cost and computational power. It allows a parallelization of scientific codes with minimal programming effort. We also optimize grid concept to be less sensitive to network parameters. -
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Black Hole Cortex
Sphere surface layers of visual cortex approach maximum info density
...A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we think our eyes see, the imagination, is the densest and smallest layer. SphereSurfaces outside it recursively have more neurons, more surface area, but less density since it has to eventually dimension-reduce to high level ideas, like there are 10000 Wikipedia page names that cover most parts of the world. We can think of Wikipedia as a layer above our brains, a global SphereSurface of large surface area (a cortex layered on billions of minds) and small (10000 most important pages) density. -
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birgHPCC
Rapid CUDA Cluster Deployment
...While retaining the major functions of the original birgHPC, including automated computing cluster conversion and auto slots detection, the new version (birgHPCC) is capable of creating and configuring a compute unified device architecture (CUDA) computing cluster, hence the extra “C” in the name. In addition to the increase in image size (less than 2 gigabytes) and a new Linux base (previously Debian, now Ubuntu), CUDA-capable bioinformatics software programs, such as NAMD, HOOMD-blue, VMD, GPU-HMMER and GPU-BLAST, are pre-installed in birgHPCC, along with the CUDA driver, libraries and software development kit (SDK). In short, birgHPCC is the world's first CUDA-ready, bioinformatics-based, live DVD. -
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Star Files
A FITS file sorting application.
Welcome to the StarFiles Homepage! This application is designed to sort FITS star image files taken by professional astronomers at observatories. The application sorts the files by their image type: Bias, Dark, Flat, and Object. The Flat and Object images are sorted by filters U, B, V, R, and I. The application allows the user to create and save a profile of a given observatory's FITS header format, for future sorting use. This application also provides a header viewer for FITS image file. -
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Low cost version of MiniLA project. The only difference is that TiniLA board is assembled with XC95144XL. Thus, less features is available...
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This tool is designed to solve generalized pattern matching problem, by which we only find a set of sub-patterns, ignoring the gaps in between the sub-patterns. This tool is extremely fast and also has good tolerance to errors.
