Showing 4076 open source projects for "alpha linux"

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  • 1

    Military Engineer Applications

    Field calculations and background information for Military Engineers

    Detailed info Need expand.
    Downloads: 0 This Week
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  • 2

    SAMSVM

    A tool for misalignment filtration on SAM-format sequences with SVM

    Applying the LIBSVM, a package of support vector machine, SAMSVM was developed to correctly detect and filter the misaligned reads of SAM format. Such filtration can reduce false positives in alignment and the following variant analysis.
    Downloads: 0 This Week
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  • 3
    PRIMUS

    PRIMUS

    Pedigree Reconstruction and Identification of a Maximum Unrelated Set

    NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.edu This versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS. We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection. PRIMUS reads in user-generated IBD estimates and outputs the maximum possible set of unrelated...
    Downloads: 1 This Week
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  • 4
    Krowdix
    Krowface (Krowdix 3.0) is a simulation and implementation tool of social networks. To visualize and analyze the evolution of different social networks in real time. And the creation of a social network, configuring the parameters that define it. All this through a simple web interface and user friendly.
    Downloads: 0 This Week
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    OCaml interface to FFTW3 -- the Fastest Fourier Transform in the West! (http://www.fftw.org/). The code is developed at https://github.com/Chris00/fftw-ocaml
    Downloads: 0 This Week
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  • 6
    VoIP Honey project provides a set of tools for building an entire honeynet, thus includes honeywall and honeypot emulating VoIP environments such as Asterisk PBX or OpenSer with fully configurable connections. Voip Honey runs on GNU/Linux and Windows Systems. It can be compiled for Mac OSX as well.
    Downloads: 2 This Week
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  • 7
    Virmid

    Virmid

    Virtual Microdissection for SNP calling

    NEWS: 11-07-2013 A new version Virmid 1.1.0 has been uploaded. 08-29-2013 Virmid paper is now published in Genome Biology. Kim S et al, "Virmid: accurate detection of somatic mutations with sample impurity inference", Genome Biology 2013, 14:R90 http://genomebiology.com/2013/14/8/R90/abstract Virmid (Virtual Microdissection for SNP calling) is a Java based variant caller designed for disease-control matched samples. Virmid is also specialized for identifying potential within...
    Downloads: 0 This Week
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  • 8

    ConvertMAS

    ConvertMAS converts Chemical File Formats mol, mol2 and sdf.

    ConvertMAS - molecule converter; use to convert Chemical File Formats. It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available...
    Downloads: 0 This Week
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  • 9

    xorlisp

    Bit level lambda continuations and nothing else - Queue automata

    Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a...
    Downloads: 0 This Week
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  • 10
    msci

    msci

    Mad Science

    A bunch of miscillaneous scientific simulation projects not important enough to have their own project. Includes Gaspard-Rice chaotic scattering simulation, sea ice emissivity modelling, IDL library and any others I create or find kicking around.
    Downloads: 0 This Week
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  • 11
    MD PnP | OpenICE

    MD PnP | OpenICE

    Open Source Integrated Clinical Environment

    As of 2015-06-23, this project may now be found at http://www.github.com/mdpnp/mdpnp. A prototype reference implementation of the standard for the Integrated Clinical Environment (ASTM F2761-2009)
    Downloads: 1 This Week
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  • 12
    C++ Revenue Management Open Library
    That project (RMOL) aims at giving developers concerned by the Revenue Management arena a library delivering a reference implementation for most of the published algorithms and methods. That library is intended to be used in simulated environment: it does not intend to be used in real world production systems.
    Downloads: 16 This Week
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  • 13

    magmaNeighbours

    Lattice-Algorithms in MAGMA

    Two-Neighbours Genus Symbol Rational Maß Reflective Lattices
    Downloads: 0 This Week
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  • 14

    Usul

    Foundation bolt load for Pressure Vessel

    Downloads: 0 This Week
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  • 15

    QG fantasy maps plugins

    Some pythons plugins to enhance fantasy maps creation with QGis

    QGis permit the use of python script to handle maps. Here are some python code ready to use and modify, and some associated samples.
    Downloads: 0 This Week
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  • 16
    zet-evacuation
    Moved to GitHub. This is the old, unmaintained source code. https://github.com/zet-evacuation A tool to model and simulate evacuation situations in buildings using flows on graphs and cellular automatons. It allows visualization of both models in OpenGL.
    Downloads: 0 This Week
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  • 17
    jMetal.net
    .Net (C#) version of the jMetal framework (http://jmetal.sourceforge.net)
    Downloads: 0 This Week
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  • 18

    Drug Extraction

    Drug name extraction

    Drug name recognition and normalisation/grounding to DrugBank ids and standard names. Package provides 2 taggers: 1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details). 2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database. Both taggers include grounding/normalisation to DrugBank ids and standard names. Feature set: Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS DrugBankPresence...
    Downloads: 0 This Week
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  • 19

    Brownian

    A brownian motion simulator to model diffusion properties

    This is a brownian motion simulator intended to model diffusion properties of different materials.
    Downloads: 0 This Week
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  • 20
    JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
    Downloads: 0 This Week
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  • 21
    THIS PROJECT HAS MOVED TO GitHub, PLEASE VISIT: https://github.com/ssardina-agts/indigolog ------------- IndiGolog is a high-level programming language where programs are executed incrementally to allow for interleaved action, planning, sensing, and exogenous events.
    Downloads: 0 This Week
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  • 22

    IsoSearcher

    Sistema de visualización de isosuperficies en imágenes médicas 3D

    IsoSearcher es un sistema de generación y visualización de isosuperficies en imágenes médicas tridimensionales. Permite trabajar con campos escalares tridimensionales almacenados en archivos sin compresión y con imágenes médicas almacenadas en formado DICOM (Digital Imaging and Communication in Medicine) que es de uso generalizado, tanto por el equipamiento comercial como por la comunidad científica que los utiliza. Implementa algoritmos que permiten realizar mallas no-estructuradas, de...
    Downloads: 0 This Week
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  • 23
    SoftSmithy is a platform for open source Java developers. The core is an extended Java utility library. In the future there may be open source software build on this library.
    Downloads: 2 This Week
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  • 24

    CUDAlign

    CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs

    CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU....
    Downloads: 0 This Week
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  • 25

    Instrumented Telescope

    Software for instrumenting a Dobsonian telescope

    This projects hold software required for instrumenting an alt-az telescope mount. The required hardware is documented here (http://simonbox.info/index.php/astronomy). The software enables real time conversion from (measured) alt-az to ra-dec and manages a connection to Stellarium (http://www.stellarium.org/), which allows you to view where the telescope is pointing in a virtual planetarium.
    Downloads: 0 This Week
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